Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01455 ACACCCTCTTCTTTTTTTCTCTTTTCTTCTGTGAACACACATACACATACACATAAAAATACATTCTTTCGTACTATGGGTACTCTTGGTAACACGGAAGTTTACAATCACGACCATGAAGACAATGATCCTGAAGAGTATCTTCATGGGGTGAATTTCTCGATCCAGAGAGGATTCAAGGAGAAACTGAAGGCGAGTTTGAAGGAAGCTTTGTTTCCTGATGATCCCTTCAGGCAGTTCAAGAACGAGGACAAAAAGACCAGGAGGGTGCTCAAGGGGGTGCAATACTTCATCCCTATCTTTGAGTGGCTCCCAACGTATAATTGGCGTCTCTTTTGCTCTGACTTGATCGCAGGTTTAACCATATCAAGCCTTGCCATCCCTCAAGGCATTAGCTATGCCAAACTTGCAGACCTTCCTCCTCTCATTGGCCTTTATTCAAGCTTTGTCCCACCTCTGGTGTATGCTATTTTTGGGAGTTCAAGGCACATGGCTGTGGGGACGATAGCAGCAGCATCATTGCTTATTGGTCAAACCATACAAAAGGTGGCAGACCCAAACGAGGACCCAACCTTGTATCTTCATTTGATTTTCACAACCACCTTTGTCACTGGTGTTTTCCAAGCTGCTTTGGGATTTTTCAGGCTGGGGATATTGGTGGACTTTTTCTCTCATTCTACCATCAATGGCTTCATGGGAGGGACAGCAGTGATTCTCATCCTCCAACAGCTAAAGGGCGTGTTTGGAATGATACATTTTTCACAGAAAACCAACTTGGTGGCGGTGATAAAGAGCATCGTTAACAATAGACACGAGATTAGGTGGGAACCTACAGTTCTTGGAGTAGTCTTGCTTGCTTTCTTGCAATTTACCAGACACTTGAGGAACAAGAATCCAAAACTCTTTTGGGTACAGGCTATAGGTCCAATGGTGACTGTAGTAGCTGCTGGTGTTTTCACCTACCTCGTCAAGGGCCAAAAACATGGAATTCAAATTGTGGGGCATCTAGACAAAGGATTAAATCCATTGTCCATCCACTATTTGAACTTTAATGGTAAATACTTATCAGCAGTTCTGCAAGCTGGAATTATCACAGGGGTGTTATCATTAGCAGAAGGAATAGCAATAGGAAGAAGCTTTGCTGTTACTGATAACACACCTCATGATGGGAACAAAGAAATGATCGCTTTTGGCCTCATGAACTTGTTTGGATCTTTTACTTCATGCTACTTGACTAGTGGACCATTTTCGAAGACTGCAGTGAATTACAATGCAGGGTGTAAGACTGCAATGGCAAATGTGATACAGGCAGTGATAATGGCACTGACACTGCAATTTTTGGCACCATTATTTGGCTACACCCCTCTTGTTGCTCTCTCAGTCATTATCATATCTGCCATGCTTGGACTCATTCATTACGAAGAAGTCGTTCATCTCTTCAAAGTTGACAAATTTGATTTTGTCATTTGCATGGCTGCTTTCCTCGGAGTTATCCTCATAAGCATGGATGTTGGTCTCATGATTTCTGTTGGACTAGGGGTTTTGAGAGCACTGTTATATGTGGCTAGACCAGCGCCATGCAAGCTTGGAAAGTTAGCTGAAGTTGGTTTATACAGAGACACAGAGCAATATAAAGTTTCAACATTCGCTGGGGTTCTTATTATTCAACTTGGTTCTCCCGTTTACTTTGCAAATTCTAATTACGTCAAAGAAAGGATTATGAGGTATATTCGAAGTGAACAAGCTTCTACCGGAGAGAATGTTGAACACATCGTACTTGATTTGTCAGGAGTAACATCCATTGACACAACTGCTATCAAAGCATTGGATGAGCTGGTTAAAGTGTTGACAAAGAATGCAATTAAGATTTTGTTCGTAAATCCGAGGGTGGAGGTGTTGGAGAAGCTTGTGTTATCAAAGTTTGTTGACAAAATTGGGAAAGAAGCGTTCTATCTAACATTGGATGAGGCAGTGATGGCAAGTCAATATTCACTTCGTTCATCAAAGGAAAATCATGGCGAAGGTGGCATGGTTTAA 2037 0.4202 TPSSFFLFSSVNTHTHTHKNTFFRTMGTLGNTEVYNHDHEDNDPEEYLHGVNFSIQRGFKEKLKASLKEALFPDDPFRQFKNEDKKTRRVLKGVQYFIPIFEWLPTYNWRLFCSDLIAGLTISSLAIPQGISYAKLADLPPLIGLYSSFVPPLVYAIFGSSRHMAVGTIAAASLLIGQTIQKVADPNEDPTLYLHLIFTTTFVTGVFQAALGFFRLGILVDFFSHSTINGFMGGTAVILILQQLKGVFGMIHFSQKTNLVAVIKSIVNNRHEIRWEPTVLGVVLLAFLQFTRHLRNKNPKLFWVQAIGPMVTVVAAGVFTYLVKGQKHGIQIVGHLDKGLNPLSIHYLNFNGKYLSAVLQAGIITGVLSLAEGIAIGRSFAVTDNTPHDGNKEMIAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKTAMANVIQAVIMALTLQFLAPLFGYTPLVALSVIIISAMLGLIHYEEVVHLFKVDKFDFVICMAAFLGVILISMDVGLMISVGLGVLRALLYVARPAPCKLGKLAEVGLYRDTEQYKVSTFAGVLIIQLGSPVYFANSNYVKERIMRYIRSEQASTGENVEHIVLDLSGVTSIDTTAIKALDELVKVLTKNAIKILFVNPRVEVLEKLVLSKFVDKIGKEAFYLTLDEAVMASQYSLRSSKENHGEGGMV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01455 678 Pfam Sulfate permease family 112 493 IPR011547 GO:0016020
Vimu8g01455 678 Gene3D STAS domain 524 664 IPR036513 -
Vimu8g01455 678 PANTHER SULFATE TRANSPORTER 61 663 IPR001902 GO:0016020|GO:0055085
Vimu8g01455 678 CDD STAS_SulP_like_sulfate_transporter 551 654 - -
Vimu8g01455 678 NCBIfam sulfate permease 99 657 IPR001902 GO:0016020|GO:0055085
Vimu8g01455 678 ProSitePatterns SLC26A transporters signature. 141 162 IPR018045 GO:0008271|GO:0008272
Vimu8g01455 678 SUPERFAMILY SpoIIaa-like 543 658 IPR036513 -
Vimu8g01455 678 ProSiteProfiles STAS domain profile. 542 661 IPR002645 -
Vimu8g01455 678 Pfam STAS domain 548 657 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01455 Vimu-Chr8 20676484 20681156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01455 49 669 Inorganic Solute Cotransporters AT5G19600 60.932 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01455 K17471 - gmx:100789107 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01455 8 20676484 20681156 Vimu8g01455 8 20676484 20681156 ECH