Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01453 ATGGATGACATGGAAGACGACGCTAGGTACCCCCCTAAGTCATTCTCCCTCAACCGTCAGAATCCCTCTCACCGACATAAACACCCCGCACGCGCCGCCCCTTACCACCGCCCATTGCCCACGCGCTACGACCAGCCCATGGTGGAAGACGACGATGAAGATGATGAAAACGAACACGAAGATTTCAACGACGACAACGACGAAGGCGAAAACGGGTACGATGAAAACGATATCGTGGGGTATCCCCGGATCCCGAAGAAGCGCAAGGTGGTAGTCGCGCCAGGATCCTACGAATTCGCGCCACGTTTTAAATTGTCGTACGGTTCGCGTGGTTCGGGTTCTTCTGGTGAAGAGTGGAGCGAGCACGAGACTTTCGTGCTGTTGGAGGTGTGGGGGGACAAGTTCCTCCAGCTCGGGAGGAACAGTTTAAGGTCCGAGGAATGGCACGAGGTTGCCGAAAAGGTTTCGGAGGAATTGAAGACAGAGAGAAGCGTGACGCAGTGTAGGAGCGTGCTGGACAAGCTGAAGAGAAAGTACAAGAAGGAGAAAACCAAAATGGATGAAATGGGGATGGGCTCTTGCAAATGGCCCTACTTCAAGAAGATGGACATGTTGATGGCATCCTCGGCAAGGCAAGAGTATGGCCTTGCGTGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGATTTGATGAGATGAGGGATAGTCCAGGGGAGTCTGAGAGTGATGATGATGAGGAAGAAGAGGAGTTTGGTGGTGGCGGTGCTGCTGCTGAGGATGAGGAGGATGAGACATCGTTTCGTGTGTTGGCGGATTCGATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTTAACAGGGAGTTGGAGTTGCAGAAGAAGCAGATTCTCGAGAGGGCGCAGGCTGAGATTGCCAAAATTCAGGAAGGGGATGAGGACGAAACCGACACTTCCACGGAGAATCTCAAAAGAACGAAATGTGATGAATCAGAAAGGAAGAGAGGGTCCAACAAGCATGAGCCTCATCAAAGTGACATTGAGGAGAAGTTGCAGGAGGATGAATCTGCCCTTGGTTCTGTTGAAGGCAATCTCACGATGGATGGAATTATTAAATCCAAGGAAAAGGGGAAGAAGAAATTTGATAATCCTGGAAAGGATGGTGATATCTTGATAGAGTGCACCAGTTTTGGAGGGAACATCGTCTATATGCTGATAAAGAGATCCTCCCAGTAA 1314 0.4977 MDDMEDDARYPPKSFSLNRQNPSHRHKHPARAAPYHRPLPTRYDQPMVEDDDEDDENEHEDFNDDNDEGENGYDENDIVGYPRIPKKRKVVVAPGSYEFAPRFKLSYGSRGSGSSGEEWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVSEELKTERSVTQCRSVLDKLKRKYKKEKTKMDEMGMGSCKWPYFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDDDEEEEEFGGGGAAAEDEEDETSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQEGDEDETDTSTENLKRTKCDESERKRGSNKHEPHQSDIEEKLQEDESALGSVEGNLTMDGIIKSKEKGKKKFDNPGKDGDILIECTSFGGNIVYMLIKRSSQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01453 437 MobiDBLite consensus disorder prediction 247 270 - -
Vimu8g01453 437 Pfam Myb/SANT-like DNA-binding domain 118 204 IPR044822 -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 238 275 - -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 395 411 - -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 332 382 - -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 1 80 - -
Vimu8g01453 437 Gene3D - 119 181 - -
Vimu8g01453 437 Coils Coil 291 333 - -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 332 411 - -
Vimu8g01453 437 MobiDBLite consensus disorder prediction 47 74 - -
Vimu8g01453 437 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 108 338 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01453 Vimu-Chr8 20648049 20654720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01453 119 342 Trihelix Transcription Factor Family AT1G54060 30.182 2.54e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu8g01453 Myb_DNA-bind_4 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01453 - - gmx:100790166 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01453 8 20648049 20654720 Vimu8g01453 8 20648049 20654720 ECH