Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01450 ATGCCGAGTCGATCAACGGGAGTCATAACCCAAGACTGGGACCCCATCGTTCTGCACAAGGCCAAGCCCAAGGCGCAGGACCTGCGCAACCCCAAGGCCGTGAACCAGGCGCTCCGATCCGGCGCGGAGGTGCTTACTATCAAGAAGTTCGACGCCGGTTCGAACCGGAAGGCTGGCGGTCCGGCTGTGAACCCGAGGAAGCTGGAGGAGGGGACGGAGCCAGCAGCGTTGGAGCGCGTAGCGGGGGAGATCCGGCACGCGATCCAGAAGGCGCGTTTGGTGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGGACGCAGGTGGTGCAGGAGTACGAAAATGGCAAGGCAGTGCCTAACCAGGCCGTGCTGGCCAAGATGGAGAGGGTTCTCTGTGTCAAGCTCAGGGGCAAAATCGGAAAGTGA 438 0.6187 MPSRSTGVITQDWDPIVLHKAKPKAQDLRNPKAVNQALRSGAEVLTIKKFDAGSNRKAGGPAVNPRKLEEGTEPAALERVAGEIRHAIQKARLVKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLCVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01450 145 Gene3D - 71 145 IPR010982 GO:0003677
Vimu8g01450 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 142 - -
Vimu8g01450 145 FunFam Multiprotein bridging factor 1 72 145 - -
Vimu8g01450 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Vimu8g01450 145 SMART mbf_short4 87 142 IPR001387 -
Vimu8g01450 145 SUPERFAMILY lambda repressor-like DNA-binding domains 84 139 IPR010982 GO:0003677
Vimu8g01450 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Vimu8g01450 145 CDD HTH_XRE 87 139 IPR001387 -
Vimu8g01450 145 Pfam Helix-turn-helix 88 135 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01450 Vimu-Chr8 20628077 20628514 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vimu8g01450 MBF1 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01450 K03627 - twl:119996545 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01450 8 20628077 20628514 Vimu8g01450 8 20628077 20628514 ECH