Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01448 ATTAGATGCTTAAAAACATTGCCTTGTGATTATCTTCTCTCTGCTTCTGTACACACAAACATGGCTGCTCTCTCTAATGGCAACCAGGCTTCTTCCTTCAAAATTCCTCCCATCAAGTTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCCCTTTCAGGAAAAGAGTTTGAGACAATAGACCCAAGGACAGGGGAATTGATTACGAAGATCGCAGAGGGAAGAAAAGAAGACGTTGATGTTGCTGTGAAAGCGGCACGTGTCGCTTTCGACCATGGTCCATGGCCTCGTATGCCCGGTGTGGAAAGAGCAAGAATTATGATGAAATGGGCAGACTTAATTTTGCAAAACATAGATGAACTAGCAGCATTGGAGGCCATCGATTCTGGGAAGTTGTACCACTTTTGTAAGGTTGCTGACATTCCTGCAGCAGCAGCTACTGTACGTTATTATGCTGGTGCAGCAGATAAAATCCACGGGGAGGTCTTGAAAGCTTCCGGGGAGTTTCATGCATATACTTTACTAGAACCAATTGGTGTTGTGGGACACATTATTCCCTGGAACTTCCCTACCACCATGTTTTTTGCCAAGGTTAGTCCTTCCTTGGCTGCCGGTTGCACAATGATCCTCAAGCCTGCTGAACAAACACCTCTCACAGCCTTGTATTATGCTCATCTAGCTAAATTGGCTGGAGTTCCAGATGGAGTACTTAATGTAGTACCTGGATTTGGTCCAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATATGGTAAGCTTCACAGGTTCAACAGAAGTGGGGCGTGAAATAATGCGTGCTGCAGCTAGCAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCGTCATAATTTTTGATGATGCTGATGTAAATAAAGCTGCCGAGCTTGCCCTCTTGGGCATCGTATTCAATAAGGGAGAAATCTGTGTTGCAGGTTCTCGTGTGCTCGTCCAAGAAGGAATTTATGATGAATTTGAGAAGAAATTGGTGGAGAAAGCAAAAGCCTGGGTGGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGACCTCAGGTTGATAAGAAGCAATTTGAAAAGATCCTTTCCTATATTGAGATTGGAAAGAAAGAAGGGGCCACCCTTTTGACAGGCGGAAAAAGAGTGGGAAACAAGGGTTACTACATTGAACCTACAATTTTCTCCAATGTTAAGGAGGACATGCGTATAGTACAGGAGGAGATATTTGGTCCTGTGATGGCCTTGAGGAAGTTTAAGACTATTGAGGATGCAATTAAGATTGCCAACAGTACTAAGTATGGTCTAGCATCAGGCATTGTGACCAAGAGTTTGGACACTGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAATTGCTACTTTATCTTCGGGAATGACATTCCTTACGGAGGGTACAAAATGAGTGGATTTGGAAGAGATTTTGGATTGGAAGCTCTACACAAGTATCTACAAGTTAAATCTGTTGTAACTCCCATCTACAACTCTCCTTGGCTTTGA 1566 0.4336 IRCLKTLPCDYLLSASVHTNMAALSNGNQASSFKIPPIKFTKLFINGQFVDSLSGKEFETIDPRTGELITKIAEGRKEDVDVAVKAARVAFDHGPWPRMPGVERARIMMKWADLILQNIDELAALEAIDSGKLYHFCKVADIPAAAATVRYYAGAADKIHGEVLKASGEFHAYTLLEPIGVVGHIIPWNFPTTMFFAKVSPSLAAGCTMILKPAEQTPLTALYYAHLAKLAGVPDGVLNVVPGFGPTAGAAISSHMDIDMVSFTGSTEVGREIMRAAASSNLKPVSLELGGKSPVIIFDDADVNKAAELALLGIVFNKGEICVAGSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEIGKKEGATLLTGGKRVGNKGYYIEPTIFSNVKEDMRIVQEEIFGPVMALRKFKTIEDAIKIANSTKYGLASGIVTKSLDTANTVSRSIRAGIVWINCYFIFGNDIPYGGYKMSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01448 521 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 291 480 IPR016163 GO:0016620
Vimu8g01448 521 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 22 511 - -
Vimu8g01448 521 Pfam Aldehyde dehydrogenase family 50 511 IPR015590 GO:0016491
Vimu8g01448 521 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 45 310 - -
Vimu8g01448 521 SUPERFAMILY ALDH-like 35 517 IPR016161 GO:0016491
Vimu8g01448 521 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 315 326 IPR016160 GO:0016491
Vimu8g01448 521 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 509 IPR016162 GO:0016491
Vimu8g01448 521 FunFam Aldehyde dehydrogenase, putative 483 509 - -
Vimu8g01448 521 FunFam Aldehyde dehydrogenase3 291 480 - -
Vimu8g01448 521 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 287 294 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01448 Vimu-Chr8 20606798 20611413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01448 24 521 Aldehyde Dehydrogenase Gene Family AT3G24503 69.461 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01448 K12355 - gmx:100791396 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04720 11 67477378 67479930 Vimu8g01448 8 20606798 20611413 PCT