Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01447 ATGGCAAGTCATTCACAATCCTTTGTCCAGATTCCAGCAGTAAAGTTTACCAAGCTTTTCATCAATGGAGAATTTGTAGATTCTATTTCAGGGAAAACGTTTGAGACTGTTGATCCAAGAACAGAGGAAGTGATTGTTGAAATAGCAGAAGCTACCAAAGAAGACGTTGATATTGCTGTGAAGGCTGCACGTGAAGCATTTGATTTTGGTCCATGGCCACGTATGCCTGGTGCTGAAAGAGCAAAGATTATGCTGAAATGGGCGCAACTAATTGAACAGAACGTAGAAGAAATAGCAGCATTGGACACCATTGATGGAGGAAAGCTTTTCAGTTGGTGTAAGGCTGTGGATGTTCCTGAAGCCTGCAACATCCTACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAAATGTGTTCAAAACATCCCGTGACCTCCACTTGTATTCTCTTATGGAACCTGTTGGTGTTGTTGGTCACATTATCCCTTGGAATTTCCCTACTGTCATGTTTTTTGCCAAGGCCGCCCCGGCCTTGGCTGCTGGTTGCTCCATGGTCATCAAGCCTGCTGAGCAAACACCTCTCTCATCACTCTTCTATGCTCATCTTGCTAAGTTGGGACATGAATACATATTTTCCCTTTTCATGAAGGCTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAACAGCAGGGGCTGCAATAAGCTCACATATGGACATTGATGCGGTCAGTTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCGGCCTTGAGCAATTTGAAACCTGTTTCTCTTGAATTAGGAGGAAAGTCACCAGTGTTGATTTTTGATGATGCTGATATAGACAAAGCTGTTGATCTTGCTCTCTTTGGCATCCTACACAACAAGGGAGAAATCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATATATGATGAATTTGAGAAAAGGGTTGTGGAGAAGGCTAAAACTTGGGTAGTAGGAGACCCTTTTGATCCAAAAGTTCAACAGGGACCCCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGATCATGGAAAGAGTGAAGGAGCCACCCTATTGACTGGGGGTAAACCAGTGGGAAAAAAGGGATACTACATTGAGCCAACCATTTTTACCAATGTTAAGGAGGAGATGCTAATTGAACAAGAGGAAATATTTGGACCTGTGATGACACTTTCTAAGTTCAAAACCATTGAGGATGCAATTAAGAAAGGCAACAGCTCCAAATATGGCCTAGCTGCAGGGATTGTGACCAAGAACTTGGATATTGCCAACACTGCATCAAGGTCCATCCGTGCAGGCATCATTTGGATCAACTGCTTCTTTGCATTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGACTGGAAGCACTTCATAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA 1527 0.4237 MASHSQSFVQIPAVKFTKLFINGEFVDSISGKTFETVDPRTEEVIVEIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERAKIMLKWAQLIEQNVEEIAALDTIDGGKLFSWCKAVDVPEACNILRYYAGAADKIHGNVFKTSRDLHLYSLMEPVGVVGHIIPWNFPTVMFFAKAAPALAAGCSMVIKPAEQTPLSSLFYAHLAKLGHEYIFSLFMKAGIPDGVLNVVPGFGSTAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADIDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKRVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIDHGKSEGATLLTGGKPVGKKGYYIEPTIFTNVKEEMLIEQEEIFGPVMTLSKFKTIEDAIKKGNSSKYGLAAGIVTKNLDIANTASRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01447 508 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 274 281 IPR029510 GO:0016491
Vimu8g01447 508 FunFam Aldehyde dehydrogenase3 278 467 - -
Vimu8g01447 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 467 IPR016163 GO:0016620
Vimu8g01447 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 496 IPR016162 GO:0016491
Vimu8g01447 508 FunFam Aldehyde dehydrogenase, putative 470 496 - -
Vimu8g01447 508 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 302 313 IPR016160 GO:0016491
Vimu8g01447 508 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 21 295 - -
Vimu8g01447 508 Pfam Aldehyde dehydrogenase family 26 498 IPR015590 GO:0016491
Vimu8g01447 508 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 499 - -
Vimu8g01447 508 SUPERFAMILY ALDH-like 9 504 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01447 Vimu-Chr8 20588650 20592290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01447 9 508 Aldehyde Dehydrogenase Gene Family AT3G24503 67.066 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01447 K12355 - gmx:100784449 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04719 11 67471408 67473957 Vimu8g01447 8 20588650 20592290 PCT