Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01439 ATGCCGCGATCCAATTCCGCCGCGCACCACCACCGTCAGAGCTCCGACAACTTCATCCTCGACGCTCACAGAAGCTGGTTACAGTCTTCGACTTTCGCGCAGGAGTTCGGGGCTCGATCTTCGAGCTTGAGGAAAATTGACGATGATCGTGTTTTGAGCAGCGGCTTGCTTGATCTGCATTCCTTAGATACCGAGCTTTTACCTGAGACGTATGGTGATCACAATGAATACTTCACTAATCACACTGTTCTGGGACAGAGTTTTGATGACTATGAGTCAATCCTCTCTGGTAACAAACATGTACAAAGGTCTCGGGGATTGCCTGAGAACAATTTTCTGAAAAGTGTCCCAACAGAAAAGGAGAGAGCAAACAATGTTGCCAAGATTAAAGTAGCGGTCCGGAAGAGACCCCTTAATAAGAAGGAAATAGCAAAGAGAGAAGAAGACATTATTTCTATAGATTCAAATTTTCTCACAGTGCATGAAAGAAAACTCAAGGTGGACTTAACAGAATATGTTGAGAAACATGAATTTGTCTTTGATGCTGTGCTGAACGAAGATGTTTCAAATAATGAAGTATATGCCGAGACTGTGGAGCCAATTGTTCCGCTCATTTTCCAACGAATAAAAGCAACTTGCTTTGCATACGGTCAAACTGGCAGTGGGAAGACATATACTATGCAACCATTGCCTCTCAAAGCTTCACAAGACATTTTAAGATTAATGCACCACACCTACTGGAATCAAGGTTTCCAATTGTATGTTAGTTTCTTTGAAATATATGGGGGAAAACTTTTTGATCTCCTCAATGATCGAAAAAAACTTTTCATGAGGGAGGATGGGAAACAACAGGTTTGCATTGTTGGCTTGCAAGAATATAGAGTATCTAAAGTAGAGACAATCAAGGAATTTATTGAGAAAGGAAATGCCACAAGAAGTACTGGCACAACTGGAGCAAATGAGGAATCCTCTCGATCACATGCTATACTTCAGCTATGCATTAAGAGATCAGCTGATGGGACTGAATCAAAGCCTGCTCGACTTGTGGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGACAAGCAGACTAGGATTGAAGGGGCAGAAATAAATAAAAGCTTACTTGCTCTGAAAGAATGCATTAGAGCTTTGGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACGGAAGTTCTGCGAGATTCTTTTGTTGGTAATTCGCGCACTGTAATGATATCATGCATTTCACCTAGCTCAGGTTCATGCGAGCATACTCTTAACACGTTAAGATATGCTGACAGAGTGAAGAGCCTGTCAAAAGGAAACAACTCTAGAAGGGATCCTCTTTCTTCCTCAAACCTGAGAGAGTCCACTGTGTTGGCTGGGTCTTCAATTTTAGCTCATGATGATACCTTGGAGGATGAAATAACGTATGTCTCCAGTGACAGGAATCGATTTGGTTGGCCCAAACATCCAGAAAGAGAACTCTCTCCAAATAATGTGGACCGTGTTCCAAGTGGTAGAATGGGGGGAAATTTGGCGTCATCTGGGTATTCTAATCCACCAAACGGTCCAAGAGGTGGTCAAAATGACAGAACTGCAAATGAATATGATTACATAGGACCCATACATGAACAAGACAGAACAAGAAAAACGATTAAGAGGGTGGATAACAACCACTTATCTGCTTTTGAAGACAAGAAGAAGATAGAATCTCGTGTTAATATTGATGCATCACTTTTTCAGACTACTTATTCTGATCCGGATGATAATTTAAATGCCCTCCTGAAGGAAGAGGAAGATCTAGTAACAGCTCATCGTAGACAGGTGGAGGAAACCATAGACATTGTTAGAGAGGAGATGAATTTACTTGTTGAAGCTGACCAACCAGGAAATCAATTGGATGATTATATTTCCAAATTGAATACCATTTTATCACAAAAGGCTACAGGAATCCTTCAATTGCAGACACAGCTGGCTCAGTTTCAGAGACGTTTAAACGAGTATAATGTTTTCGTATCTTCTGGTAATTGA 2073 0.4115 MPRSNSAAHHHRQSSDNFILDAHRSWLQSSTFAQEFGARSSSLRKIDDDRVLSSGLLDLHSLDTELLPETYGDHNEYFTNHTVLGQSFDDYESILSGNKHVQRSRGLPENNFLKSVPTEKERANNVAKIKVAVRKRPLNKKEIAKREEDIISIDSNFLTVHERKLKVDLTEYVEKHEFVFDAVLNEDVSNNEVYAETVEPIVPLIFQRIKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYWNQGFQLYVSFFEIYGGKLFDLLNDRKKLFMREDGKQQVCIVGLQEYRVSKVETIKEFIEKGNATRSTGTTGANEESSRSHAILQLCIKRSADGTESKPARLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSRRDPLSSSNLRESTVLAGSSILAHDDTLEDEITYVSSDRNRFGWPKHPERELSPNNVDRVPSGRMGGNLASSGYSNPPNGPRGGQNDRTANEYDYIGPIHEQDRTRKTIKRVDNNHLSAFEDKKKIESRVNIDASLFQTTYSDPDDNLNALLKEEEDLVTAHRRQVEETIDIVREEMNLLVEADQPGNQLDDYISKLNTILSQKATGILQLQTQLAQFQRRLNEYNVFVSSGN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01439 690 Coils Coil 620 640 - -
Vimu8g01439 690 SMART kinesin_4 126 457 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 Gene3D Kinesin motor domain 109 454 IPR036961 -
Vimu8g01439 690 PANTHER KINESIN-RELATED PROTEIN 6 38 684 IPR027640 GO:0003777|GO:0007018
Vimu8g01439 690 CDD KISc_KIF2_like 128 449 - -
Vimu8g01439 690 FunFam Kinesin-like protein 110 454 - -
Vimu8g01439 690 ProSiteProfiles Kinesin motor domain profile. 128 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 Pfam Kinesin motor domain 134 450 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 MobiDBLite consensus disorder prediction 496 511 - -
Vimu8g01439 690 MobiDBLite consensus disorder prediction 525 543 - -
Vimu8g01439 690 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 PRINTS Kinesin heavy chain signature 351 369 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 PRINTS Kinesin heavy chain signature 401 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 PRINTS Kinesin heavy chain signature 208 229 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu8g01439 690 ProSitePatterns Kinesin motor domain signature. 350 361 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vimu8g01439 690 MobiDBLite consensus disorder prediction 496 546 - -
Vimu8g01439 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01439 Vimu-Chr8 20536295 20541338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01439 127 498 Calmodulin-binding Proteins AT5G65930 32.723 2.15e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01439 K10393 - gmx:100783382 1181.39