Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01430 ATGCCTCCAAAGCCAACACCTCCACCGGCTCCGGCTTATGCTGCTCAACCTCCTCCACCTCCGCCTCCTTTTATCATCAGCAGTGGCGGGTCTGGATCAAACTATTCAGGTGGCGAGCCACTTCCTCCTCCTTCTCCGGGAATTTCATTGGGGTTCTCTAAGAGCACTTTTACCTACGAGGAGTTGGCACGAGCAACGGATGGATTCTCTGATGCGAACCTCCTCGGACAAGGTGGATTCGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAGGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCGAACAACACATTGGAGTTCCATTTGCATGGTTGGTACTCCTGA 480 0.5083 MPPKPTPPPAPAYAAQPPPPPPPFIISSGGSGSNYSGGEPLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGWYS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01430 159 MobiDBLite consensus disorder prediction 1 47 - -
Vimu8g01430 159 Pfam Protein tyrosine and serine/threonine kinase 74 155 IPR001245 GO:0004672|GO:0006468
Vimu8g01430 159 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vimu8g01430 159 Gene3D Phosphorylase Kinase; domain 1 48 144 - -
Vimu8g01430 159 MobiDBLite consensus disorder prediction 1 26 - -
Vimu8g01430 159 ProSiteProfiles Protein kinase domain profile. 69 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01430 159 SUPERFAMILY Protein kinase-like (PK-like) 43 158 IPR011009 -
Vimu8g01430 159 FunFam proline-rich receptor-like protein kinase PERK1 47 144 - -
Vimu8g01430 159 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 41 156 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01430 Vimu-Chr8 20436997 20437476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01430 12 155 Trihelix Transcription Factor Family AT4G32710 61.111 9.70e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu8g01430 PK_Tyr_Ser-Thr 1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01430 - - gmx:100781944 251.136