Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01403 ATGGGGGAAGGCGAAGGAGGAGATATCGCTCCGAAGAATGCGTTGTCGTCGGAAGTTGTTCCGCCGGCGGTAACGTCTACGGCGGCGCTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTTGATTTCACGGGCGCGCCGGAGCATCCCCAGCAGCAGCCGGTGGCGGTGTTGCCGTTGCCGCCACAGGCGCCTCATTCGAGGATTGGGAAACCAGAATCTCCAAAATCTAGATCAAGACCTAACTTTGAAATGAAAGATGCTACACCCAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAACGAAGCTGCTAGAAGAGAAGCTGTTGAAGCTACCTTGGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGTAGCCCTCATGGAACACGTGATAGCAGGGTGCTTAGTCCTAACTTTACTGAGGAAGCCGGGGAAGTTTTAATATTAGGAAAACATAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTTCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGGCAGGCTTTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCTCCGGTATCCAAGAAAAGAAAAGGTCAAGAACTCTTCTTTTGGCCTACAGCCAAGGATCCATCGATTAGCAAGTTGGGACAACAGGTAAACCATGTTAGAGGTCCAGCACCTTCCTCATCTTTGTCACCTGTCTCAGGCGCTCGTGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATTCAACCACAACACCTCAAGGAGCTATGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAATGACACTTTCAGACCAGAAAATTTTAATGGAAAAGCATGCAGAAGATCAGACAGAAACTTCCCTTGCTTCGTCAAGTCAGGAGCAATTACCACCAAGCCAAAAGGAAGGTCATGTTGAGAAGACTGTGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATGATTCCAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCCGCCTCCCCTATTGGGCCAATGGCTCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGGGATTTTCTCAATAGGGTTATAACTATGGGAGAAATAAATGGCAAGTTAATACTTTCCTCCTTTCAAATTTCTGATGCCACCAGTCTAACATTACATATTGGGGGCTTGACTTTGGTATTAAATACATTACTGTATGAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAATCAAAAGGACCCAATCATCAATGGCGTAGGAAATGCCAACTCAGTGATAGTGCGTCAGCATGCAGCCAGTAGCAACGGTGTTACCAAACCTTCTGTTTCACCTTTGGCAACAACTTCGACACGCATGATCCCTGGCAATATTTCTGAAAATGGGGAACCTAAGGTCAAGATCGAAAAAGATATATGA 1809 0.4422 MGEGEGGDIAPKNALSSEVVPPAVTSTAALEVPAKKLARQLDFTGAPEHPQQQPVAVLPLPPQAPHSRIGKPESPKSRSRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSRVLSPNFTEEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTAKDPSISKLGQQVNHVRGPAPSSSLSPVSGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAMTLSDQKILMEKHAEDQTETSLASSSQEQLPPSQKEGHVEKTVADDCSSANQTDKISPDDSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINGKLILSSFQISDATSLTLHIGGLTLVLNTLLYETKCSSLARNELENQKDPIINGVGNANSVIVRQHAASSNGVTKPSVSPLATTSTRMIPGNISENGEPKVKIEKDI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01403 602 MobiDBLite consensus disorder prediction 364 429 - -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 369 383 - -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 568 587 - -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 395 409 - -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 71 90 - -
Vimu8g01403 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 186 220 IPR005172 -
Vimu8g01403 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 93 128 IPR005172 -
Vimu8g01403 602 SMART CXC_2 183 224 IPR033467 -
Vimu8g01403 602 SMART CXC_2 91 131 IPR033467 -
Vimu8g01403 602 PANTHER TESMIN/TSO1-RELATED 50 494 IPR028307 -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 54 68 - -
Vimu8g01403 602 ProSiteProfiles CRC domain profile. 92 223 IPR005172 -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 41 90 - -
Vimu8g01403 602 MobiDBLite consensus disorder prediction 568 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01403 Vimu-Chr8 20332419 20339329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01403 1 501 CPP Transcription Factor Family AT4G29000 55.856 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu8g01403 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01403 - - gmx:100818116 968.378