Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01398 ATGAGTTTCTCATCTGGGTTTCGGATTGGCGCTGCTGATTGTGATGAACAGTTGAAACAAAATCAAGGAATATCCCCTCAAGACTCAGTCATGTATAAACCATTCATGACATGTGATGATCCAAAAGGGGTAGTTGAGTGTGGGGCTATAAGAAAATACAGGACCAGTTCTCAGAAAATGAAGGACAAGACAAAAACTAGGAGGCCGGCTGAGACATCATTGGCTAACAAACAAGACAAAGAGGAGAAGGTTTCAAAAGGATCCGCTGAGAGGTCTTTTGATCCATCATCCTTGCAGCTCATGGAGGTTTCTAGAGGGGCTCAAAGGTTGAACAACATGATTGATTCATGGTCTAGGGGTCTTATGTATGATGGAAGTTCTGAAGATATAGCAAAAGATTTGCTAAAAGGGGCTCTTGACCTGCAAGAATCTCTACTGATGCTTCGCAAGGTGCAAGAAGCTTCACAACACATGGCTACCCTGAAGAGAAGACAAAATGGGAAACCTGAAAGCAGCAGATTTGATGCATTGCCGGTTGATGGAACTGCACATTGTGATCACTTTGGTGAACAAAGTTATCCAATGGGGTTCCGAAGACGTTGGCCTTCAGCTGATGGTTCTTCAAGTAGCTGCACCGAGGAGCTTAAGAAAGTGATTAAGGAGAGCCTGGTTAGTCAAAATTTGTTCAAAACCACTGAAGGGTTGGATTCATCATCCACATTCCACTCAACAAACTCAAGCCAATCTTCTGGTGCTTGGAATGATAAGCTTTCTGATTCTTCTTTCTCACCAACAACTTCAAGGAGGGAAAGACGATCCAATCTGGTTGCCAAGCTGATGGGTTTAGAAGATGCCCCTTCAAGATCATTCCCAGCTGTTATACAGAAACAGCTGGAGAGTCCAAAGATTCTGAATCAGAAGAGACATGTATTTGACATAGATATGCCTAAGGTGAGAAAAAATGTTGAGAATGTTAGTCTAGAACGTAAGATGACCTTGAAGGAAATTCTTGAGACTACTCACTTCAATGGACTTTTGAAGAAGAGTCCTGTCAGAGAGCATAATGTTCATGTCCATCCTTCTTTTGATGCACACTACAAACATGTTGGTGATTTACCTCCTATTGTACTTATGAAACCTCGATGTAGTCCATATCAGGAATGTGTGAACAGTTATGACCATGTTGTTCCTCCAGAAAAGTTATCCCTCAGAAATCTAAAAGCAAAAGCTGCCCCTTCCAAAGTGTTCCAACACAAGGAAGACTCAACCACCAACGTGGGGAGAAAAATGGAAGAACATTTATCCAAAAGGCTTACCAGAGAGGACAGAACTAAGCTCGTCAGAGAGGTTGTGGAGTTGAAGGAGAAAGAAATCAAGCCTATTGAAAATGAGAAGGCTCCAGGAGGTAAGGTAAGACTGCCTAGTCATGTCAGTCACAAATCACATGTAAATGAAACTGTTGATAGAAAAGCTAAGGTAAAGACCATTGCCACTAGTAGAAAGCTTTCAGAAAAGGAGGTTTCAAAATCCAAACATCAACAACAAAATCTTATACCAGTAGTTGAGGTTTCGAAACCCAAAGTTGTGACAAAATCCCAAGAAGATCAAGGAGAAATCAGCTCTACAAGTACCAAGATTAGGAAGCCACAGAGTGGCTCCCGAAGTGAAAAGAATGAGACTCCCAGCAGAAAGAGCACTGTTTCAAATTCAAATACCATATCAAAACCAAAGAGCCAAAAGACTACTTATTCCAAGGAACAGAATAAGAAACAGATGAAGAAGCAAAGGCCTGCTGTTGCTGAGCCTGAAGCAGCTAAACCAGTCGATCAACAGTTAGGCCAAGAAGAAGCAATGAGTGTTGCTGTTTCTCATAAAGATGATTGCCCTGAGATTAGAATAATAACTACAATAGCAGATGATCTTGCGATGGAGCATGAAGAAGTATATGCATCTGCAAGTAAGATTAGAGAAGTTTCTGAGCAAAACCAGAGTTCTTCTAGTGATGATTACTTTATGCTCAAGTCTGAACATGAAAATGATATCATTCTTGCTGAGAAAGCTCATGACAGCATCAATATCAGTGAAACAGATTACAAGCCTGACAAAGAGAATTCCGAGCTTAAATATTTACTTCTGACAAGTCAATCATTTATTGAGCATGCAGAGAAGTTCCTCAATCTTGATGTTGACTGTCCCAAGGTCCTACCAAAAAGTGAAACTAAGCGAATATCCAATCTCACACTCTTTTTGGACTGTGCAAATGAAGTCACTGAGCGTAAAAGCTTGCAGGGATCACAAGCAGTTAACCCTTTATTGCTAACTTGTGCGGGGAATCCAAGATTGCACATTTCTTTAGGGAGGTTGGTTGATGAAGTATGTAGTACCATTGAGCATCTAACATCTTACAGTGAAAAAGTGGCTTCAGATAATATATATGCAATGATGGAGAGAGATATAAAGGGAAACAATGGACTGATAAATGGAATATGGAACTGGGGTTGGAGGCATGGATTTTCTGCAGATGAAGCTGAGCAAGTTGTGAATGAAGTAGAGAACCTAGTTTTAGGTGGATTGATTGAAGAGATAATTGTAAATTTATGA 2601 0.406 MSFSSGFRIGAADCDEQLKQNQGISPQDSVMYKPFMTCDDPKGVVECGAIRKYRTSSQKMKDKTKTRRPAETSLANKQDKEEKVSKGSAERSFDPSSLQLMEVSRGAQRLNNMIDSWSRGLMYDGSSEDIAKDLLKGALDLQESLLMLRKVQEASQHMATLKRRQNGKPESSRFDALPVDGTAHCDHFGEQSYPMGFRRRWPSADGSSSSCTEELKKVIKESLVSQNLFKTTEGLDSSSTFHSTNSSQSSGAWNDKLSDSSFSPTTSRRERRSNLVAKLMGLEDAPSRSFPAVIQKQLESPKILNQKRHVFDIDMPKVRKNVENVSLERKMTLKEILETTHFNGLLKKSPVREHNVHVHPSFDAHYKHVGDLPPIVLMKPRCSPYQECVNSYDHVVPPEKLSLRNLKAKAAPSKVFQHKEDSTTNVGRKMEEHLSKRLTREDRTKLVREVVELKEKEIKPIENEKAPGGKVRLPSHVSHKSHVNETVDRKAKVKTIATSRKLSEKEVSKSKHQQQNLIPVVEVSKPKVVTKSQEDQGEISSTSTKIRKPQSGSRSEKNETPSRKSTVSNSNTISKPKSQKTTYSKEQNKKQMKKQRPAVAEPEAAKPVDQQLGQEEAMSVAVSHKDDCPEIRIITTIADDLAMEHEEVYASASKIREVSEQNQSSSSDDYFMLKSEHENDIILAEKAHDSINISETDYKPDKENSELKYLLLTSQSFIEHAEKFLNLDVDCPKVLPKSETKRISNLTLFLDCANEVTERKSLQGSQAVNPLLLTCAGNPRLHISLGRLVDEVCSTIEHLTSYSEKVASDNIYAMMERDIKGNNGLINGIWNWGWRHGFSADEAEQVVNEVENLVLGGLIEEIIVNL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01398 866 MobiDBLite consensus disorder prediction 562 581 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 478 511 - -
Vimu8g01398 866 PANTHER OS01G0228800 PROTEIN-RELATED 25 865 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 234 270 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 55 89 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 582 600 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 461 623 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 55 100 - -
Vimu8g01398 866 MobiDBLite consensus disorder prediction 533 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01398 Vimu-Chr8 20294546 20298305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01398 698 863 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 33.333 4.35e-21 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01398 - - gmx:100797863 1296.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01398 8 20294546 20298305 Vimu8g01398 8 20294546 20298305 ECH
Vimu11g04702 11 67333736 67338361 Vimu8g01398 8 20294546 20298305 PCT