Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01389 ATGGATCCTCCGGCCAGGAGCTGGAGCATCCACATGCGCTCCGAGATAACGGCCAAGTACGATGTTATTGATCGGGTCGGGTCGGGTGCCTACGCCGACGTGTACGACGGACGGCGCCGCTCGGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGATCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAAAAGGTGGTGTCGGAGTTGGTGAGTTTAAGAGGTGGATGGTGCAGGCTCTGAGTGCTGTGGATGAGTGCCACCGGAATATGATCGTTCATAGAGACTTAAAACCCGCGAATTTTTTAGTTTCCGATGACGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGTGGAGTGTGGATTCGATGGTCACCAGGAAGATGATGATGCTTCAAATAGTGAAAGATCACTCCAACAACATCCTGAAGCTTTTTCCCAACTAGACAACTTAAATCAAACTGAACATGAAAACCCAGATCAGAGAACCCTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGATGAACTTTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGCTGTCTGACATCATGTGTTGGAACACGCTGGTTTAGGGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTGTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGCGATGTAGACCAGCTTAGCAGAATTGTGAGTGTTTTGGGGAACATTAATGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAAAAATCTCATTTTTCAAGGTGGAAAACCCAACTGGTCTTGAAGCATGCTTGCCCAGTTGCACGCCTGATGAAGTTTCCCTAGTCAAAAGACTGGTTTGTTACGATCCAGATAAGAGAGCCACAGCAATGGAGTTACTTCAAGACAAGTATTTCAGTGAAGTACCACTTCCTGTTCCAGTTTCTGAGTTGGGGGTTCCTTTGATTAGTATTGGACATGACAAGGATCGCCCTGGAGGGCACAATGAAATAGGTTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACCACAACTCCTTGA 1362 0.4787 MDPPARSWSIHMRSEITAKYDVIDRVGSGAYADVYDGRRRSDGAAVALKEVHDSQSASREIEALRILKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGKGGVGVGEFKRWMVQALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVECGFDGHQEDDDASNSERSLQQHPEAFSQLDNLNQTEHENPDQRTLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTTSDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGVEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCSKLPDYGKISFFKVENPTGLEACLPSCTPDEVSLVKRLVCYDPDKRATAMELLQDKYFSEVPLPVPVSELGVPLISIGHDKDRPGGHNEIGSDSDLEEFRTLNITTTP 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01389 453 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01389 453 SUPERFAMILY Protein kinase-like (PK-like) 6 416 IPR011009 -
Vimu8g01389 453 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01389 453 Pfam Protein kinase domain 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01389 453 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Vimu8g01389 453 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01389 453 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vimu8g01389 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vimu8g01389 453 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vimu8g01389 453 Gene3D Transferase(Phosphotransferase) domain 1 105 409 - -
Vimu8g01389 453 MobiDBLite consensus disorder prediction 188 208 - -
Vimu8g01389 453 PANTHER CELL DIVISION PROTEIN KINASE 19 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01389 Vimu-Chr8 20254523 20256563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01389 4 452 Core Cell Cycle Gene Families AT4G28980 58.369 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vimu8g01389 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01389 - - gmx:548056 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01389 8 20254523 20256563 Vimu8g01389 8 20254523 20256563 ECH