Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01384 ATGCATAGAGCTGTTCTTCAGAGCTCACCAGTGCAACAAATGATGGCTGCTGGAAACCCTAACTGGTGGAACATCAATATCAATACCATGCCTCCACAAGCTCCTCCTTTCTTCTCATCTCCTTCTAACTTTCCCATCCCTTATGCTCCCACTTCTCTCCCCTTTCCTTCTTGGAATGAAAATCAAGACCTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGGGTGGTGGATGAACAAGGTAAGGTTGGGATGGGCCAGTTTCAGACAAAGAAGTTGGAGAACTGGGAGGATCAAATGCTAGGTCAGCCTCCAAACGCTTCTCTTGTTGATGTTAAACAAGAAAATTCAGTTAACAGCTATGTATACGGCCATGGAAACGAAGAGCTTCAGTCATCAAAGCCATCCTGGTCTCCGAAATCCTGTGCCACGAGTTTCAGTAGCAACATGTTAGATTTCTCTAACAGTAGTAGCACAGATGCAAGGCTTCCTCCACCAGATCGATCTTCTGAGTGCAATAGCACTGCAGCTGGTGGGGCACTGAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGGCTACATTCAAGGTTAGAAAGGAGAAGTTAGGCGACAGAATTACAGCTCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGCGGTGGACCAGTGAGTGGGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATAATGATAACGGCTTGAAAAGGAAAGCAGCTGGAGAACCGGATACTGAAGAAAAGAAGGGGCTGAGGAGTAGAGGATTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCAGACTATTGGGCACCTGCCCTAGGAGGGGGCTTTCGTTAG 1002 0.4721 MHRAVLQSSPVQQMMAAGNPNWWNININTMPPQAPPFFSSPSNFPIPYAPTSLPFPSWNENQDLPESWSQLLMSGVVDEQGKVGMGQFQTKKLENWEDQMLGQPPNASLVDVKQENSVNSYVYGHGNEELQSSKPSWSPKSCATSFSSNMLDFSNSSSTDARLPPPDRSSECNSTAAGGALKKARVQPSATTQATFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSGGPVSGRQQNSVQGEKNCIFPEDPGQLLNNDNGLKRKAAGEPDTEEKKGLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01384 333 FunFam transcription factor bHLH68 isoform X1 194 247 - -
Vimu8g01384 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Vimu8g01384 333 CDD bHLH_AtbHLH_like 195 244 IPR045239 -
Vimu8g01384 333 MobiDBLite consensus disorder prediction 154 176 - -
Vimu8g01384 333 MobiDBLite consensus disorder prediction 154 188 - -
Vimu8g01384 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 315 - -
Vimu8g01384 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 247 IPR036638 GO:0046983
Vimu8g01384 333 Gene3D - 187 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01384 Vimu-Chr8 20224789 20228136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01384 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.729 6.69e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01384 - - gmx:100786555 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01384 8 20224789 20228136 Vimu8g01384 8 20224789 20228136 ECH
Vimu11g04688 11 67266304 67269066 Vimu8g01384 8 20224789 20228136 PCT