Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01383 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATCAGAGGTTTCTGCAATGGAAAGTTCTGACAAGTTTTCTACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCTGGTTCCGAGTCACCGGAGAGAGATGGAGGTGTGGAAGAAAAAAATGGGCTCCCTTTAAGCATGGTCAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAATGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTATTGGTGCTAGTGCTGGCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACTGTTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGGGTATTCCTTCTATGGTAATCATGATCTCGGTTATTTTGGTGGTTCTGTAAGCTTTCTTCTTCATCTTGGTTATCAATTGTTTGCTGCTGTGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAGAAGAATGATGGTGATGCAGAAGCCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTAGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCACGAAGTATAAAGAATTTATCATGATCAGAAGTGGCACCCTTATAAATCAGAATCCTAAGTCTTCCAATGTCACAGGCTCAGGCTGGTTGATTCTGATGATGTTTTCACCAATGACAAGTGCAGGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTCGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 1134 0.4418 MSVPLEQGYVGLSEVSAMESSDKFSTSGGLNLKATELRLGLPGSESPERDGGVEEKNGLPLSMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVGLGKDCGLFSPRGIGASAGKAESANQQISVVKDKVPLPPKLLNEKKPQISAPAAKGYSFYGNHDLGYFGGSVSFLLHLGYQLFAAVEQVVGWPPIRSFRKNSMATQPQKNDGDAEAKSGCLYVKVSMDGAPYLRKVDLKNFSTYMELSSALEKMFSCFTITKYKEFIMIRSGTLINQNPKSSNVTGSGWLILMMFSPMTSAGQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01383 377 SUPERFAMILY CAD & PB1 domains 213 261 - -
Vimu8g01383 377 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 364 IPR003311 GO:0005634|GO:0006355
Vimu8g01383 377 ProSiteProfiles PB1 domain profile. 216 359 IPR000270 GO:0005515
Vimu8g01383 377 Gene3D - 210 370 - -
Vimu8g01383 377 MobiDBLite consensus disorder prediction 37 57 - -
Vimu8g01383 377 Pfam AUX/IAA family 290 368 IPR033389 -
Vimu8g01383 377 Pfam AUX/IAA family 35 261 IPR033389 -
Vimu8g01383 377 SUPERFAMILY CAD & PB1 domains 319 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01383 Vimu-Chr8 20196428 20199476 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu8g01383 AUX_IAA 9.3e-39 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01383 K14484 - gmx:100803754 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01383 8 20196428 20199476 Vimu8g01383 8 20196428 20199476 ECH
Vimu11g04685 11 67228495 67230268 Vimu8g01383 8 20196428 20199476 PCT