Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01365 TTGTTTGGTTTGGTTTTGGGTGTTGCTGCTTTGGGATCGAAGCGTGCCTTTGTTTGTATTGTTGTAGCAGCAGCGGTCGATAGGGTTAAGACCATGGAGCGCATCATCGGTGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCATTCGGCGAAATCTACCTCGCTACGCATATTGATACCTTCGAAATCGTCGCGGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAATTGCTTTACGAGGCCAAGCTCTACAATATTCTACAGGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTCGACGGAGAGGATAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTGTTTGTTTACTGTGGAAGAAAGTTTTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGATGACTAGAATTGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTGGGTCGTAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCTCAACTAATCGCCACATTCCTTACAGGGAAAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTATTTTCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTAGCAACTCCTATTGAGGTTTTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTTCATTATTGTCACTCTCTAACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTGTTTCGGGATCTATTTGCTCGTGAAGGTTATGATTTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAAGCACAAAAGAATAGGGCCCAACCTCGCATGTCTACGGTCCCTGGAGCAAGCAACAGTCCTGCAGTGCCAATGGATGTGGACAACAATCGAGGGGATGTCTCAGCAGAACGCATTAAATCAGGCAATGTAACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCTGGTTTAAAAAATCTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTCTTGCTGGCACCTCAAAAAGGAGCTCTTTGAAGCCTGCCTTGTCCACTGAAGCTGCAAACATAGTAAACGGACAAGGAAGTAACAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTTCAGCGCATATCTTCTGCCAAATGA 1374 0.4309 MFGLVLGVAALGSKRAFVCIVVAAAVDRVKTMERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVATPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQAQKNRAQPRMSTVPGASNSPAVPMDVDNNRGDVSAERIKSGNVTGSGVKIQFKSPGLKNLGSEKPLDKNIFGEANIPSTSYSLAGTSKRSSLKPALSTEAANIVNGQGSNKIGPSSSWISSVQRISSAK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01365 457 SMART serkin_6 40 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01365 457 ProSiteProfiles Protein kinase domain profile. 40 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01365 457 MobiDBLite consensus disorder prediction 334 353 - -
Vimu8g01365 457 CDD STKc_CK1_delta_epsilon 39 313 - -
Vimu8g01365 457 PANTHER CASEIN KINASE-RELATED 38 343 - -
Vimu8g01365 457 MobiDBLite consensus disorder prediction 334 352 - -
Vimu8g01365 457 FunFam Casein kinase I isoform delta-like 32 370 - -
Vimu8g01365 457 SUPERFAMILY Protein kinase-like (PK-like) 36 321 IPR011009 -
Vimu8g01365 457 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vimu8g01365 457 Gene3D Transferase(Phosphotransferase) domain 1 16 364 - -
Vimu8g01365 457 Pfam Protein kinase domain 40 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01365 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01365 Vimu-Chr8 20099613 20102884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01365 31 258 Miscellaneous Gene Families AT3G23000 28.692 3.76e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu8g01365 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01365 K08960 - gmx:100805890 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01365 8 20099613 20102884 Vimu8g01365 8 20099613 20102884 ECH
Vimu11g04680 11 67197652 67201106 Vimu8g01365 8 20099613 20102884 PCT