Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu8g01365 | TTGTTTGGTTTGGTTTTGGGTGTTGCTGCTTTGGGATCGAAGCGTGCCTTTGTTTGTATTGTTGTAGCAGCAGCGGTCGATAGGGTTAAGACCATGGAGCGCATCATCGGTGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCATTCGGCGAAATCTACCTCGCTACGCATATTGATACCTTCGAAATCGTCGCGGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAATTGCTTTACGAGGCCAAGCTCTACAATATTCTACAGGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTCGACGGAGAGGATAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTGTTTGTTTACTGTGGAAGAAAGTTTTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGATGACTAGAATTGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTGGGTCGTAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCTCAACTAATCGCCACATTCCTTACAGGGAAAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTATTTTCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTAGCAACTCCTATTGAGGTTTTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTTCATTATTGTCACTCTCTAACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTGTTTCGGGATCTATTTGCTCGTGAAGGTTATGATTTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAAGCACAAAAGAATAGGGCCCAACCTCGCATGTCTACGGTCCCTGGAGCAAGCAACAGTCCTGCAGTGCCAATGGATGTGGACAACAATCGAGGGGATGTCTCAGCAGAACGCATTAAATCAGGCAATGTAACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCTGGTTTAAAAAATCTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTCTTGCTGGCACCTCAAAAAGGAGCTCTTTGAAGCCTGCCTTGTCCACTGAAGCTGCAAACATAGTAAACGGACAAGGAAGTAACAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTTCAGCGCATATCTTCTGCCAAATGA | 1374 | 0.4309 | MFGLVLGVAALGSKRAFVCIVVAAAVDRVKTMERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVATPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQAQKNRAQPRMSTVPGASNSPAVPMDVDNNRGDVSAERIKSGNVTGSGVKIQFKSPGLKNLGSEKPLDKNIFGEANIPSTSYSLAGTSKRSSLKPALSTEAANIVNGQGSNKIGPSSSWISSVQRISSAK | 457 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu8g01365 | 457 | SMART | serkin_6 | 40 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu8g01365 | 457 | ProSiteProfiles | Protein kinase domain profile. | 40 | 308 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu8g01365 | 457 | MobiDBLite | consensus disorder prediction | 334 | 353 | - | - | |
Vimu8g01365 | 457 | CDD | STKc_CK1_delta_epsilon | 39 | 313 | - | - | |
Vimu8g01365 | 457 | PANTHER | CASEIN KINASE-RELATED | 38 | 343 | - | - | |
Vimu8g01365 | 457 | MobiDBLite | consensus disorder prediction | 334 | 352 | - | - | |
Vimu8g01365 | 457 | FunFam | Casein kinase I isoform delta-like | 32 | 370 | - | - | |
Vimu8g01365 | 457 | SUPERFAMILY | Protein kinase-like (PK-like) | 36 | 321 | IPR011009 | - | |
Vimu8g01365 | 457 | ProSitePatterns | Protein kinases ATP-binding region signature. | 46 | 69 | IPR017441 | GO:0005524 | |
Vimu8g01365 | 457 | Gene3D | Transferase(Phosphotransferase) domain 1 | 16 | 364 | - | - | |
Vimu8g01365 | 457 | Pfam | Protein kinase domain | 40 | 258 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu8g01365 | 457 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 155 | 167 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu8g01365 | Vimu-Chr8 | 20099613 | 20102884 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu8g01365 | 31 | 258 | Miscellaneous Gene Families | AT3G23000 | 28.692 | 3.76e-14 | 72.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CK1_CK1 | Vimu8g01365 | Pkinase | 1.1e-28 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu8g01365 | K08960 | - | gmx:100805890 | 807.364 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu8g01365 | 8 | 20099613 | 20102884 | Vimu8g01365 | 8 | 20099613 | 20102884 | ECH | |
Vimu11g04680 | 11 | 67197652 | 67201106 | Vimu8g01365 | 8 | 20099613 | 20102884 | PCT |