Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01360 ATGGCAGGGAGTTCATCAAACTCAGGGAGGGCGAAAAGCGTGGTTGAAGGAAACAAACACGCAAAGGAAATCCAATTCAACGACGAGTTGCATCTGGAGTTCATACTCGATGCAGGAATTGTCAAAGACTGCGAACTGAGTTTACCGTACGGGGTGCAATTGACGAATGACAGATGGAACTTATTTCTGCCATTGTTAGGGTTTGAAGAAACCCTAATAGGGTTTTTGAAGGAAGAAGAAGATGTGAGAAAAGGGATCGAAGTGAAGGTATACGATAAAGGAGGCCATGAATTCGAAATGATGCTTTTGAAGGAAGAAGAAGACGTGAGAAAAGGAATCGAAGTGAAGGTGTACGATAGAGGAGGCCATGAATTCGAAATGATGCTGAAAAAATGGGTGATAGATTCAAACCAGTTCTACGTGCTCAATAGAGGATGGTTCAGTTTCTGCAACGAACATGGTTTGGGACAAGGAGATCTCGTAGCTTTGCGTGCTTTTCGCCATTCCATAACTGATATGTTATGTTTTGTTGTGACTTTTAGAAGAATGAGGTAA 555 0.4216 MAGSSSNSGRAKSVVEGNKHAKEIQFNDELHLEFILDAGIVKDCELSLPYGVQLTNDRWNLFLPLLGFEETLIGFLKEEEDVRKGIEVKVYDKGGHEFEMMLLKEEEDVRKGIEVKVYDRGGHEFEMMLKKWVIDSNQFYVLNRGWFSFCNEHGLGQGDLVALRAFRHSITDMLCFVVTFRRMR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01360 184 CDD B3_DNA 110 182 IPR003340 GO:0003677
Vimu8g01360 184 SUPERFAMILY DNA-binding pseudobarrel domain 108 179 IPR015300 -
Vimu8g01360 184 Gene3D - 98 184 IPR015300 -
Vimu8g01360 184 ProSiteProfiles B3 DNA-binding domain profile. 114 184 IPR003340 GO:0003677
Vimu8g01360 184 PANTHER OS05G0237600 PROTEIN 104 181 - -
Vimu8g01360 184 Pfam B3 DNA binding domain 110 167 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01360 Vimu-Chr8 20065897 20066451 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu8g01360 B3 6.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01360 - K03178 pvu:PHAVU_004G169500g 169.088