Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01359 ATGGCAGAAGGTTCATCAAATGATGCAGGGAAGGGAAAAAACATCATTGAAGACAAAGATTTTGAGAGAGAATTTATGTACAAGGACGAGATGCAGTTGGAGTTCGTGTTCAACGTTGGTCATGTTAAAAACTTCGAGTTGAGCATGCCATATAGGGCACAATTGACCAACGACAAGTGGAATCTGTTTTTGCGTGTGCCCTACTTCGAAGATATCCTTTTACAGTTCCTCAAAGAAGAAGAAGATGTGAAAGAGGGACTCCCAGTGACAGTGTATGACAAAGGGGGACATGAGTTCCCAATGATGCTTAAGAAATTTCATAAAGATTCTGTCTCTTACTATGTACTGAATCGAGGGTGGTTCAACTTTTGCGACCAAAAACGGTTGCAGGAAAATGATGTTGTTGCACTGCGAACTTTTCGACATGCAATAACAGACAAGTTATCCTTCGTTGTTACTTTCACAAAAATGAGATGA 477 0.4025 MAEGSSNDAGKGKNIIEDKDFEREFMYKDEMQLEFVFNVGHVKNFELSMPYRAQLTNDKWNLFLRVPYFEDILLQFLKEEEDVKEGLPVTVYDKGGHEFPMMLKKFHKDSVSYYVLNRGWFNFCDQKRLQENDVVALRTFRHAITDKLSFVVTFTKMR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01359 158 Gene3D - 7 158 IPR015300 -
Vimu8g01359 158 SUPERFAMILY DNA-binding pseudobarrel domain 75 150 IPR015300 -
Vimu8g01359 158 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 154 IPR005508 GO:0003677
Vimu8g01359 158 Pfam B3 DNA binding domain 74 139 IPR003340 GO:0003677
Vimu8g01359 158 CDD B3_DNA 75 156 IPR003340 GO:0003677
Vimu8g01359 158 ProSiteProfiles B3 DNA-binding domain profile. 89 158 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01359 Vimu-Chr8 20061839 20062315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01359 24 156 B3 DNA Binding Superfamily AT4G03170 28.777 5.56e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu8g01359 B3 9.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01359 - K21085 pvu:PHAVU_004G169500g 275.018