Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01356 ATGCGGACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAAAAGAACCGAATCTGGCTTGGAACCTTCGCCACCGCAGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTTACGATAAAGGGTTCCTCGGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCTTCCAACTCCCCCCGCGACGTGCAGGCTGCGGCGGCCAAGGCCGCCTCCATGGAGGCGCCTCCTCCTCGGACCCCTCCCTCCCCGGCCGCAGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCTCTGGGGTCCATCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCCTCGACCCGGATGAAGGGTGGCCCTATCCTCAACCGTGGTTTCACGGCATTTATGACGGTGGGTACTTCATCGGCGACATGAACATGGTTTCAATGCAAGAGTCAGAAAGCATGGTTCTTTCCTTGTGGCCTTGA 501 0.6307 MRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPPRTPPSPAAAPEDDLGEIVELPPLGSIFDSPDPNTEFVFLDPDEGWPYPQPWFHGIYDGGYFIGDMNMVSMQESESMVLSLWP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01356 166 MobiDBLite consensus disorder prediction 59 96 - -
Vimu8g01356 166 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Vimu8g01356 166 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Vimu8g01356 166 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Vimu8g01356 166 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Vimu8g01356 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 107 - -
Vimu8g01356 166 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Vimu8g01356 166 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Vimu8g01356 166 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01356 Vimu-Chr8 20045052 20047128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01356 2 140 AP2-EREBP Transcription Factor Family AT5G25810 55.063 1.32e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu8g01356 AP2 4.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01356 K09286 - gmx:100804801 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01356 8 20045052 20047128 Vimu8g01356 8 20045052 20047128 ECH
Vimu11g04671 11 67131362 67133588 Vimu8g01356 8 20045052 20047128 PCT