Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01346 ATGTTTGCTGGTACACAGGAGACAAATCAAAGGCTGTTTTACAAACTTCTAGTTGACAATGTTGAGGAACTGCTCCCAATTGTGTATACTCCTGTTGTTGGTGAGGCCTGCCAGAAATATGGGAGCATCTTCAAACGTCCTCAGGGTCTTTTCATAAGTTTGAAAGAGAAGGGAAAGATCCTTGAGGTGTTGAAAAACTGGCCTGAAAAGAGTATTCAAGTTATTGTTGTAACAGATGGTGAACGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCCTTGTACACAGCATTAGGAGGAGTTCGTCCATCAGCATGTTTGCCTATTACGATTGATGTGGGAACAAACAACGAGAAATTACTGAATGATGAGTTTTACATCGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAATATTCCGAACTTCTGCATGAGTTCATGACTGCTGTCAAGCAAAACTACGGAGAAAAAGTTCTTATACAGTTTGAAGATTTTGCAAACCACAACGCTTTTGAGTTGCTTGCAAAATATGGTACAACTCATCTTGTTTTCAATGATGATATTCAGGGAACTGCATCTGTGGTACTTGCTGGGGTTGTGGCAGCCTTGAAGCTCATTGGTGGTACTCTGGCTGATCACACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGGACAGGAATAGCAGAACTTATAGCTCTCGAGACATCAAAGCAGACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTCGATTCAAAGGGTTTGATTGTTAGTTCAAGAAAGCATTCACTTCAACATTTCAAGAAGCCATGGGCTCATGAACATGAGCCTGTTGACACTCTCTTAGAAGCTGTTAAGGTAATCAAACCTACAGTTTTGGTTGGATCATCAGGAGTGGGAAAAACATTTACAAAGGAAGTAATTGAAGCTTTGTCTTCCATCAATGAAAAACCTCTTATTTTGGCTCTCTCCAATCCAACATCACAATCTGAGTGTACAGCTGAAGAGGCTTATCAATGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTATAGAATACAAGGGAAAAGTGTACTATTCAGGCCAGGCCAACAATGCTTACATTTTCCCTGGTTTTGGTTTGGGATTGGTAATCTCTGGAGCAATCAGAGTTCATGATGATATGCTTCTGGCAGCATCGGAAGCCTTGGCTAAACTAGTGACTGAGGAGAACTATGAAAAGGGCTTGATTTATCCACCATTCTCTGACATCAGAACAATTTCAGCTAACATAGCTGCAGGTGTTGCTGCCAAGGCATATGAGCTAGGCTTGGCTACACGTCTCCCTCGTCCTGAGAATCTTGTGAAGTATGCCCAGAGTTGCATGTATTCTCCTGTGTACCGAAACTATAGGTGA 1446 0.4267 MFAGTQETNQRLFYKLLVDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALETSKQTKTPIEETRKKIWLVDSKGLIVSSRKHSLQHFKKPWAHEHEPVDTLLEAVKVIKPTVLVGSSGVGKTFTKEVIEALSSINEKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPIEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPPFSDIRTISANIAAGVAAKAYELGLATRLPRPENLVKYAQSCMYSPVYRNYR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01346 481 FunFam NADP-dependent malic enzyme 1 3 191 - -
Vimu8g01346 481 PRINTS Malic enzyme signature 12 36 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 168 186 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 193 209 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 108 130 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 224 240 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 327 343 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 PRINTS Malic enzyme signature 72 101 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 Pfam Malic enzyme, NAD binding domain 197 449 IPR012302 GO:0051287
Vimu8g01346 481 Gene3D - 1 194 IPR037062 GO:0004471
Vimu8g01346 481 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 4 196 IPR046346 -
Vimu8g01346 481 PANTHER MALIC ENZYME-RELATED 5 480 - -
Vimu8g01346 481 PIRSF ME 1 481 IPR001891 GO:0004470|GO:0004471
Vimu8g01346 481 SMART malic_2 6 187 IPR012301 GO:0004471
Vimu8g01346 481 SMART Malic_M_2 197 450 IPR012302 GO:0051287
Vimu8g01346 481 Pfam Malic enzyme, N-terminal domain 6 186 IPR012301 GO:0004471
Vimu8g01346 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 480 IPR036291 -
Vimu8g01346 481 CDD NAD_bind_1_malic_enz 197 475 - -
Vimu8g01346 481 ProSitePatterns Malic enzymes signature. 193 209 IPR015884 GO:0004471
Vimu8g01346 481 FunFam Malic enzyme 195 481 - -
Vimu8g01346 481 Gene3D - 195 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01346 Vimu-Chr8 19925322 19928880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01346 K00029 - gmx:100796117 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04665 11 67081603 67086448 Vimu8g01346 8 19925322 19928880 PCT