Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01342 ATGGGTTCTCCAAAAAGGGATGAAAGTGAGACACAAAAGGTAGAGATGAGAAGAAAAGGGAGAGCTTCCATAGCCATCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATGTTTTGCTGCTGTTTGCAAGCCGTATCATGAACAGCCTAGGTTACAGTAATAACCAACAAAGTACTAAGACTTACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTGGTGGCCTTCATGGGTAATTCAAATTCAAACCTTCTTTTTCATATACTTGCTTTGCTTTTTGAGGACAAAGGTGTAAACACTGTAATAACTAATGTGCAACAATTAGCTATAGCTATAGCATCTAACTGTAGTAGCCACTACTCAGTAGTGCAACAAGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGACAGGTCCTGAGAATTCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTCCCAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAAGACACTTCTCTCATCCAAGAAGTTCTGAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCCGGGGTTGCGTTTGCCACATATTTTTCTTGGAGGTTGGCCTTGGTAGCATTTCCAACGCTGCTTCTTCTCATCATCCCTGGCATGATTTATGGAAAGTATCTCATCTATTTGACAAAGTCCTCTGTGAAAGAATATGGCAAAGCAAGCAGCATTGTAGAACAGGCACTTAGCTCAGTGAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCACTGGGAGATATTCAGACATATTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTACAGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCTTTCATTGCTTGGTATGGAAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTGGGAGTGGTGCTTCCTGATTTGAGGTACTTCACAGAAGCATCTGTTGCAGCATCAAGAATATTTGACATGATTGATCGAATACCATTGATTGATGGTGAAGACACAAAAGGGCTTGTGTTAGATCACATAAGTGGGAAGCTAGAGTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTGAGTGATTTCAATCTGGAAGTGGAAGCAGGGAAAACGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGGAAGTCTACAGCAATAGCATTGATGCAGAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGGCTTCAATTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCAATGTTTGGAACTTCCATAAAAGAGAATATTATGTTTGGGAAAACAGATGCTACCATGGATGAAATAGTAGCAGCAGCCTCAGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAACAACGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACATGATAGCAGTTGTCAGTGGTGGTCGAATCATTGAAACCGGCACACACAATGAACTCATGAACAGACCAAATGGGCACTATGCAAACCTGGCAAAGTTACAGACACAATTGAGCATGGATGAGCAAGATCAAAATGCAGAACTAGGTGCTCTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCAAGGTCAAGTCCTGCAATATTTCCAAAGTCACCATTGCCTGATGAAGCCACCAACCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACCAGACTTCTCTTTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGGACTCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCACTATATGCTTTAACCATAGGGGGTATGATTTCTGCCTTTTTTGCCAAAAGCCATCTAGAAATGATGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATCACTCTCAATCTCCTGCAACACTACAATTTTGCTTATATGGGAGCCATGTTAACCAAAAGGATAAGACTGCGGATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCAATGAGGCTTCCATGGTCAAATCCCTTGTGGCAGACAGACTCTCTTTAATAGTCCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTTTGCTTTTATACAAGGAAAGTGTTGCTCTCCACACTTTCAACAAAATTTGTTAAGGCACAGAATCAAAGTACACAGATTGCTGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCTTTTGGGAGCATTACAAAAGTTCTACGGCTGTTTGATGAGGCACAAGAGGCTCCAAGGAAGGAGGCAAGGAAAAAGGCTTGGCTGGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTGACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGCTGGGGATAACACTAGCGGCATTAAGTTGGAAAAGATGAGTGGTAAGATAGAGTTGAAGAATGTAGATTTTGCTTATCCAAGCAGGGCAGGAACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTCGGGCTTGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATAGGCTTAATCCAAAGATTCTATGATGTTGAGAGAGGTTCAGTTAAAGTGGATAACGTAGACATAAGGGAATTAGACATTCACTGGTACAGACAGCACACAGCACTAGTGAGCCAAGAACCTGTCATATATTCTGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAAGCTGCAAGAGCTGCAAATGCTCATGAATTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCGATAATTCGGAACCCAAAGATACTACTTTTGGATGAGGCAACAAGTGCATTGGATGCGCAATCAGAACAAGTTGTGCAGGAAGCACTTGATAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTTAACACTATCAAAGAGCTTGATTCCATTGCTTATGTGTGTGAGGGCAAGGTCCTCGAGCAAGGAAACTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAATCTTGCAAGCCATCAAATCCAAACTTAG 3777 0.4255 MGSPKRDESETQKVEMRRKGRASIAIILRYADWIDVVLMLMGALGAIGDGMSTNVLLLFASRIMNSLGYSNNQQSTKTYMAEVEKCSLYFVYLGLAVMVVAFMGNSNSNLLFHILALLFEDKGVNTVITNVQQLAIAIASNCSSHYSVVQQEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLTKSSVKEYGKASSIVEQALSSVKTVYSFTAEKRITGRYSDILCRTSRLGIKQGIAKGLTVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLRYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDHISGKLEFEHVKFTYPSRPDMVVLSDFNLEVEAGKTVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKRLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVVAHKLSTIRNADMIAVVSGGRIIETGTHNELMNRPNGHYANLAKLQTQLSMDEQDQNAELGALSAARSSAGRPSTARSSPAIFPKSPLPDEATNPSPVSHPPPSFTRLLFLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAMLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLIVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKAWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIGLIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDAQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVCEGKVLEQGNYAQLRHKRGAFFNLASHQIQT 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01342 1258 SMART AAA_5 1045 1237 IPR003593 GO:0016887
Vimu8g01342 1258 SMART AAA_5 440 617 IPR003593 GO:0016887
Vimu8g01342 1258 FunFam ABC transporter B family member 19 403 637 - -
Vimu8g01342 1258 SUPERFAMILY ABC transporter transmembrane region 697 1003 IPR036640 GO:0005524|GO:0016020
Vimu8g01342 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 413 634 IPR003439 GO:0005524
Vimu8g01342 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1254 IPR003439 GO:0005524
Vimu8g01342 1258 Pfam ABC transporter transmembrane region 711 980 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01342 1258 Pfam ABC transporter transmembrane region 114 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01342 1258 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Vimu8g01342 1258 Pfam ABC transporter 1039 1185 IPR003439 GO:0005524
Vimu8g01342 1258 Gene3D ABC transporter type 1, transmembrane domain 27 1002 IPR036640 GO:0005524|GO:0016020
Vimu8g01342 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 636 IPR027417 -
Vimu8g01342 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 699 1004 - -
Vimu8g01342 1258 PANTHER ABC TRANSPORTER B FAMILY 9 722 IPR039421 -
Vimu8g01342 1258 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524|GO:0016887
Vimu8g01342 1258 FunFam Putative ABC transporter B family member 8 678 1015 - -
Vimu8g01342 1258 MobiDBLite consensus disorder prediction 653 690 - -
Vimu8g01342 1258 FunFam ABC multidrug transporter SitT 1008 1256 - -
Vimu8g01342 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 154 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01342 1258 SUPERFAMILY ABC transporter transmembrane region 87 397 IPR036640 GO:0005524|GO:0016020
Vimu8g01342 1258 MobiDBLite consensus disorder prediction 653 671 - -
Vimu8g01342 1258 Gene3D - 1008 1255 IPR027417 -
Vimu8g01342 1258 Gene3D - 403 637 IPR027417 -
Vimu8g01342 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01342 1258 CDD ABC_MTABC3_MDL1_MDL2 1018 1255 - -
Vimu8g01342 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 386 - -
Vimu8g01342 1258 Pfam ABC transporter 431 580 IPR003439 GO:0005524
Vimu8g01342 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01342 Vimu-Chr8 19898288 19906694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01342 10 1248 Calmodulin-binding Proteins AT2G36910 39.862 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01342 K05658 - gmx:100801088 2116.66