Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01335 ATGACAATACCATTTTACTACTATCTAACCATCTTGCTATTCCTGAGCTGTGTAAACTCTCAGATTCAGCTGCAAGATCAAGAACATGCAGTGTTACTGCAGATAAAACAGCACCTACAAAACCCTTCTTTCCTCAGTCACTGGACCCCTTCAAACACCCTTCACTGCTCCTGGTCAGAGATAACATGCACCAGTGACTCTGTCACTGGATTAACTCTGTTCAACAGAAGTATCAATCAAACACTTCCCGATTTCATGTGTGACCTCAAAAATCTCACACATGTTAATTTCAGCTTTAATTCCATTCCGGGGGAGTTTCCAACTTTTCTCTATAAATGCTCCAAGCTGGTGTCATTGGACCTTGAAGGGAATGAATTTTCTGGTAGCATTCCTAATGACATAGACAAGTTGGTTAACTTGCAGCATCTTAATCTCGGTTCCACCTGCTTTAGTGGTGATATTCCTGCAAGCATTGGAGGGTTGAAGCAACTGAGATTTCTTCAACTTCACTATTGTCTATTTAATGGCACTTTTCCTGCTGAGAGTATTGCCAACTTGTTCAATCTTGAATTCTTGGACATATCCTCTAACTTAGAGCTCCCTCCTTCCATGTTCCCATCAGGCCTGACCCAGTTGAAAAAACTGAAGTTCTTGCACATGTACAGTTCAAACTTCTTCGGGGAAATTCCTGATACCATTGGAGAACTGGTGGCTTTAGAGAACTTGGATTTGTCACGAAGCAACTTCAGTGGACGCATTCCCAAAGGCTTGTTCATGCTCAGGAATTTGACCATACTCTACCTCTTCAATAACAGCCTCTCTGGGGAGATTCCTGGTGAGATTGAAGCATTGAATTTGATCGAACTCGATCTTGCACAGAACAATCTCGCAGGGAGAATACCTCAAGATTTTGGGAAGCTCCAAAAGTTAAGATGGTTAAGTTTGTCTCTCAATAACTTGTCAGGGGAGATTCCACAGAGCTTAGGCCGTCTTCCATCTCTCAAACATATTCGTATCATATTCAACAATTTTTCAGGTATTCTTCCTCCTGATTTAGGTCGCTACTCGGAGCTCAAAACATTTCTGGTTGCAAACAATAGTTTCAGTGGAAAGCTCCCGGAGAACTTATGCTATCATGGTCAGTTACAGAATTTATCCGCTTATTGTAATTATCTGAGTGGGAACTTACCAGAGTCACTTGGCCATTGTAGTAGTTTGACTGATGTAAAAATTTATAGCAACGAGTTTTCTGGCAACATTCCTAGTGGTCTTTGGACTCTCAACTTGTCAGATTTCATGGTGAGCAATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTTTCCCCAACTATTTCACGCTTGGAGATAAGTCACAACCAGTTTTCTGGTAGGATTCCAACTGGGGTATCTTCATGGACTAACATGGTTGTGTTTAAAGCCAGTGAGAACTACCTCAATGGGAGTGTTCCAAAGGAGTTAACAAATCTTTCCATTCTAACAACTCTATTGCTTGATCATAACCATCTCACAGGGCCAATTCCATCAGATATAATATCATGGAAGTCCCTAGAGAATCTAAATTTGAGCCATAACCAACTCTCCGGAAAAATCCCAGATGTAATTGGTCAGTTGCCTGTCCTCAATCAGCTTGACCTGTCAGAAAACCAGTTCACAGGTCAAGTTCCTTCACTACTTCCTAGACTCACTAATCTCAACCTATCCTCTAATCATCTTACAGGGAAGGTTCCAAATGAGTTTGAAAACTCTGTGTATTCCACCAGCTTTTTGAACAATCCTGGCCTCTGTGCTGATACCTCAGTACTGAATCTAAGGCTGTGCAGTGTTGGTGCTGGCTTTGAAAAGAAAACCAAAGGCTCTTCTTGGTCTATTGCTTTGATTCTGTGTCTGGTGGCAGTAGCCTTCTTGTTGGCTTTACTGATATCAATCTTGATTATCAAACTTTTCAGAAGAGGGAAACATGTGTTGGATAACTCATGGAAACTCGTTTCCTTTCAAAGGTTGAATTTTACCGAATCAGACATAGTGTCATCAATGACAGAACACAATGTCATTGGAAGTGGTGGATTTGGCACAGTGTACCGTGTCCCTATTGATGGTTTAGACTATATTGCTGTGAAAAAGATCTCAAGTAACAGAAAGTTAGACCGAAAGCTAGAGAGCTCATTTCGTGCAGAAGTGAAAATACTGAGCAACATTCGTCATAAGAACATTGTGAAGTTGTTGTGTTGCATCTCTAATGAGGATTCTATGCTCCTTGTCTTTGGGGTTGTACTGCTGGAGCTGACAACAGGTAAAGAAGCTAATTATGGTGATGAACACTCTTCTCTTGCAGAGTGGGCATGGCGTCAGATTATTGTGGGAGGCAAGATAGAAGAGCTGATAGACAATGATTTCATGGATCCAAGTTACACAAATGAAATGTGCAGTGTTTTCAAAGTTGGTGTCTTGTGCACTTCCACACTTCCTGCTAATAGGCCTTCCATGAAAGAGGTGCTACACATGTTGGTCACCATAGGAGAAGGATTTGCTTTTGGAGAGGGGAATGTTAGGCACTTTGATGGTGTTCCTCTTCTTAAGAATTCAAGATGGGAGTGTAGGGTTGATGCTATTGATATTGATAATGGTAGTGATTAG 2655 0.4136 MTIPFYYYLTILLFLSCVNSQIQLQDQEHAVLLQIKQHLQNPSFLSHWTPSNTLHCSWSEITCTSDSVTGLTLFNRSINQTLPDFMCDLKNLTHVNFSFNSIPGEFPTFLYKCSKLVSLDLEGNEFSGSIPNDIDKLVNLQHLNLGSTCFSGDIPASIGGLKQLRFLQLHYCLFNGTFPAESIANLFNLEFLDISSNLELPPSMFPSGLTQLKKLKFLHMYSSNFFGEIPDTIGELVALENLDLSRSNFSGRIPKGLFMLRNLTILYLFNNSLSGEIPGEIEALNLIELDLAQNNLAGRIPQDFGKLQKLRWLSLSLNNLSGEIPQSLGRLPSLKHIRIIFNNFSGILPPDLGRYSELKTFLVANNSFSGKLPENLCYHGQLQNLSAYCNYLSGNLPESLGHCSSLTDVKIYSNEFSGNIPSGLWTLNLSDFMVSNNKFTGELPERFSPTISRLEISHNQFSGRIPTGVSSWTNMVVFKASENYLNGSVPKELTNLSILTTLLLDHNHLTGPIPSDIISWKSLENLNLSHNQLSGKIPDVIGQLPVLNQLDLSENQFTGQVPSLLPRLTNLNLSSNHLTGKVPNEFENSVYSTSFLNNPGLCADTSVLNLRLCSVGAGFEKKTKGSSWSIALILCLVAVAFLLALLISILIIKLFRRGKHVLDNSWKLVSFQRLNFTESDIVSSMTEHNVIGSGGFGTVYRVPIDGLDYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVFGVVLLELTTGKEANYGDEHSSLAEWAWRQIIVGGKIEELIDNDFMDPSYTNEMCSVFKVGVLCTSTLPANRPSMKEVLHMLVTIGEGFAFGEGNVRHFDGVPLLKNSRWECRVDAIDIDNGSD 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01335 884 Gene3D Transferase(Phosphotransferase) domain 1 762 850 - -
Vimu8g01335 884 Gene3D Phosphorylase Kinase; domain 1 663 761 - -
Vimu8g01335 884 SMART tyrkin_6 685 842 IPR020635 GO:0004713|GO:0006468
Vimu8g01335 884 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vimu8g01335 884 ProSiteProfiles Leucine-rich repeat profile. 522 544 IPR001611 GO:0005515
Vimu8g01335 884 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515
Vimu8g01335 884 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515
Vimu8g01335 884 Pfam Leucine Rich Repeat 567 588 IPR001611 GO:0005515
Vimu8g01335 884 SUPERFAMILY L domain-like 35 347 - -
Vimu8g01335 884 FunFam Leucine-rich repeat receptor protein kinase EMS1 82 181 - -
Vimu8g01335 884 FunFam Kinase family with leucine-rich repeat domain-containing protein 667 763 - -
Vimu8g01335 884 Gene3D Ribonuclease Inhibitor 331 609 IPR032675 -
Vimu8g01335 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 761 843 - -
Vimu8g01335 884 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 182 282 - -
Vimu8g01335 884 Gene3D Ribonuclease Inhibitor 24 199 IPR032675 -
Vimu8g01335 884 SUPERFAMILY Protein kinase-like (PK-like) 761 842 IPR011009 -
Vimu8g01335 884 FunFam Receptor-like protein kinase HSL1 isoform A 290 613 - -
Vimu8g01335 884 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Vimu8g01335 884 ProSiteProfiles Protein kinase domain profile. 685 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01335 884 SUPERFAMILY RNI-like 253 596 - -
Vimu8g01335 884 SMART LRR_typ_2 260 284 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 186 207 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 307 331 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 521 544 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 565 588 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 496 520 IPR003591 -
Vimu8g01335 884 SMART LRR_typ_2 137 161 IPR003591 -
Vimu8g01335 884 Pfam Protein kinase domain 687 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01335 884 Gene3D Ribonuclease Inhibitor 200 329 IPR032675 -
Vimu8g01335 884 SUPERFAMILY Protein kinase-like (PK-like) 679 760 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01335 Vimu-Chr8 19852685 19855999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01335 761 846 Receptor kinase-like Gene Family AT5G25930 53.488 7.14e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu8g01335 Pkinase 5.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01335 - - gmx:100819744 1149.04