Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01330 ATGCTGCAATATGCTCAAACAACAAGGGTCAATGAAAAGATAGATGTCTATAGCTTTGGAGTAGTCCTATTGGAACTGACAACAGGAAAAGAAGCTAATCATGGAGATGAGTACTCATCTCTGGCAGAATGGGCGTGGCGCCACATTCAGGTAGGAACAGATGTAGAAGATATTTTGGACAATGAAATTAAGGAAGCTTGTTACATGGATGAAATCTGCAACATCTTCAAACTTGGGGTGATGTGCACTGCAACACTTCCAGCTAGTAGACCTTCCATGAAGGAAGTCCTGAAAATTTTGCTCACCTGCAGCAGTCCACTCAGCATTGGAGACAAGAATGTTGGCTTCTATGATTCTGCTCCACTTCTTAAAAATTCAAAATGGGAAAATAACATGGAATATTATACCGATGATGATTGA 420 0.4048 MLQYAQTTRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQVGTDVEDILDNEIKEACYMDEICNIFKLGVMCTATLPASRPSMKEVLKILLTCSSPLSIGDKNVGFYDSAPLLKNSKWENNMEYYTDDD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01330 139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 103 - -
Vimu8g01330 139 SUPERFAMILY Protein kinase-like (PK-like) 6 101 IPR011009 -
Vimu8g01330 139 Gene3D Transferase(Phosphotransferase) domain 1 2 112 - -
Vimu8g01330 139 Pfam Protein tyrosine and serine/threonine kinase 6 99 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01330 Vimu-Chr8 19838565 19839544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01330 3 100 Receptor kinase-like Gene Family AT5G25930 58.163 2.55e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu8g01330 PK_Tyr_Ser-Thr 1.9e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01330 - - gmx:100785907 255.758