Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01325 GTTGCACTGTTTCTTGCAGTGAGGCCAGCAATGGGGAGAGTCACAAGGTGGATGAAGAGTTTGTTTGGAATTTCAGGAGAGAAAGAGAAGAAACAAAACATCATGGAATCTGGTTTTTCTGAGAGTACTAGTAATTCAAGAGTTTTGTGTCACAATCCAGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTGCAGTCATTCTACACAGAGAAGGACAAAAACAAGCACGCCATTGCGGTTGCTGCGGCAACCGCAGCTGCGGCTGATGCTGCTGTGGCGGCAGCACAGGCCGCCGTAGCAGTTGTTAGGCTCACAAGCCAAGGAAGGGGTGGCACCATGTTTGGCGTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCACTGTTCAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTAGAATACGGTCCCACCAATCTCGCAGGCTCATGAGTACGAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCCATGGAGAGGTTTGATGATACTCGGAGTGATTATGCAGTTCCAATCCACAACAGAAGAGCATCATCTTCTTTTGATGCTACACTTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTAGACACTTTCAGGCCTAAGTCAAGATCAAGAAGAACAATATCAGATTTTGGTGATGAGCCATCACTTCAGGCACTTTCCTCTCCCTTCTTTCCAATTTCATATAGAGGTACCCCTACAGGTTGGTCCATACCAGATCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGAGAAGAATGTCGGTTCTCTACAGCTCAAAGCACTCCACGCTTCATAAATCCTTGTAGTTGTGACTCGGTTGTACCTATGACAGCACAAAGTGTGTGTCCTGATGATAACTTGTTCCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCAGAACCAAGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAGTCTAGGAATAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAAACAGACAGAAACTATTTCCACCAGAGAGGATGGTGA 1332 0.452 VALFLAVRPAMGRVTRWMKSLFGISGEKEKKQNIMESGFSESTSNSRVLCHNPGTIPPNISQAEAAWLQSFYTEKDKNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGGTMFGVGPEIWAAIKIQALFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQARIRSHQSRRLMSTKNEAFRSQNRARRSMERFDDTRSDYAVPIHNRRASSSFDATLNINNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFFPISYRGTPTGWSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFINPCSCDSVVPMTAQSVCPDDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPSPRKRLSLNEMMESRNSLSGVRMQRSCSKAQEVINFKNAVMGKLQKSTESVRETDRNYFHQRGW 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01325 443 Gene3D - 77 148 - -
Vimu8g01325 443 ProSiteProfiles IQ motif profile. 126 151 IPR000048 GO:0005515
Vimu8g01325 443 PANTHER IQ-DOMAIN 5-RELATED 11 389 - -
Vimu8g01325 443 ProSiteProfiles IQ motif profile. 171 200 IPR000048 GO:0005515
Vimu8g01325 443 SMART iq_5 122 144 IPR000048 GO:0005515
Vimu8g01325 443 SMART iq_5 145 166 IPR000048 GO:0005515
Vimu8g01325 443 Pfam Protein of unknown function (DUF4005) 317 401 IPR025064 -
Vimu8g01325 443 Pfam IQ calmodulin-binding motif 125 144 IPR000048 GO:0005515
Vimu8g01325 443 Pfam IQ calmodulin-binding motif 150 164 IPR000048 GO:0005515
Vimu8g01325 443 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01325 Vimu-Chr8 19790960 19792560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01325 11 402 IQD Protein Family AT3G16490 50.370 1.41e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01325 - - gmx:100788710 637.106