Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01324 ATGTCAAACTTGCATTACTTGTTCATCTTTTTAGCAGTTGTTCTTCTTTTTCTGCAAAATCCCAGTAGAGTACATTGCCATACCAAGGGAATTAGAACAAGACGTTCTTCGGGTAAAGGGTTATTGACCAACATGACTAGAGTGCAGTATTCTGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGCCAAAAATAAGCTTGTGGCTTCCTACACTTTGCACGTTGATAAGAATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATCGATTCCCTTCCATTCGTCAATCTTGTGAGAGTGCTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAGGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGATGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCACTAGGAACCTATGGTTCAGCAACTTTTGCTGTGAATTCGCCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATTGGAAAGCAAGCGGTAGCATTAAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTATAAAGATTGTTACATCGAAGGCTCTGTTGATTTCATATTCGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAGCACGGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAACGTATGTTACTCTTTCCCTTCTTCACATATTCATACACAAAAACTATATATCTGTACCAAATATGTTTAATTTTTTCTGGATACCATGA 1086 0.4263 MSNLHYLFIFLAVVLLFLQNPSRVHCHTKGIRTRRSSGKGLLTNMTRVQYSEEQFMKWVNFVGSLKHSVFKAAKNKLVASYTLHVDKNPSAGDFTSIQEAIDSLPFVNLVRVLIKVHAGVYTEKVNIPAFKSYITIEGDGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQSTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRETYVTLSLLHIFIHKNYISVPNMFNFFWIP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01324 361 SUPERFAMILY Pectin lyase-like 78 336 IPR011050 -
Vimu8g01324 361 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Vimu8g01324 361 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 333 - -
Vimu8g01324 361 Gene3D - 31 341 IPR012334 -
Vimu8g01324 361 Pfam Pectinesterase 91 328 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01324 Vimu-Chr8 19783723 19785797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01324 94 326 Carbohydrate Esterase AT5G47500 52.790 7.48e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01324 K01051 - gmx:100817924 625.935