Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01313 ATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCGTTCTATCACAATGGAGTTATATCACTTGTGTTAGAATACATGGATCGTGGTTCTTTAGCAGATGTAATCAAACAAGTTAAAACTATTCTGGAACCATATCTTGCCGTGGTTTGTAAGCAGGTATTGCAAGGTCTTGTTTATCTGCACAATGAAAGACATGTAATACACAGAGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGTCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAATGTGCCATAGGAAGATTTCCTTATATTCAGTCCGAGGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGACAGTCCCCCACCTTCTGCTCCTCCTGATCAGTTCTCCCCGGAGTTCTGTTCATTCGTGTCATCCTGGTGA 627 0.4051 MNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVDSPPPSAPPDQFSPEFCSFVSSW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01313 208 SMART serkin_6 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01313 208 Pfam Protein kinase domain 5 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01313 208 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01313 208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vimu8g01313 208 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 207 - -
Vimu8g01313 208 Gene3D Transferase(Phosphotransferase) domain 1 49 208 - -
Vimu8g01313 208 SUPERFAMILY Protein kinase-like (PK-like) 4 206 IPR011009 -
Vimu8g01313 208 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01313 Vimu-Chr8 19705330 19709454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01313 1 207 MAP Kinase Kinase Gene Family AT5G56580 91.346 1.34e-141 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vimu8g01313 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01313 K04368 - gmx:100786284 410.223