Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01308 ATTTTCACTCAAAGAAGTCAACATCTGTACAGAAAAAGGTGTACAAAGCTAAAAATGAAGAATAGCTGCATTCTAGCCTTTCTCATCCTCATTCTACATTCAAACACAACAAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGTGTAGGTGTAGGTGTAGGTGTAGGCGTTGGTGTTGGTGTTGGTGTTGGCAATGGAAATGGGGGTGGCAATGGTGGAATGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCTCCTGGATCTTCAGTGCCAAAACCTGAAGTAGCTTACACAGCTCTTCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAATATTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTTGTCAAAGAGCTGTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACTAACAGATTCACGGGTTCTGTTCCTGATACTTTCAGAGACCTGGTTTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACTTTGTACATGCCTGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCCCTTCCTGAGGAACTTTTCATCAAGAATCTTGATGCAATATTTCTCAATAACAACCAGTTTGAAGGTGAAATTCCCCAAAACTTGGGTAGCTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACCGGTTGCATCCCTGAGGGAGTGGGCCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACGCTGTCATGCCTTCAAGACATTGAAGTTTTGAACTTTGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTAGTGTGCTCTTTGAGAAGTCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGTTTCAGCCAACAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAATGTTCTGTCATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAACTCTAAGAACATTGATCCCATTTCACCATCTCCTTGA 1344 0.442 IFTQRSQHLYRKRCTKLKMKNSCILAFLILILHSNTTKAVFSVGGGVGVGVGVGVGVGVGVGVGNGNGGGNGGMVWVGGGINSPEPPGSSVPKPEVAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNTNRFTGSVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPEELFIKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNFAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMAVSNSKNIDPISPSP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01308 447 FunFam Leucine-rich repeat extensin-like protein 1 98 262 - -
Vimu8g01308 447 Pfam Leucine rich repeat N-terminal domain 99 132 IPR013210 -
Vimu8g01308 447 Gene3D Ribonuclease Inhibitor 97 266 IPR032675 -
Vimu8g01308 447 SUPERFAMILY L domain-like 98 381 - -
Vimu8g01308 447 Pfam Leucine rich repeat 171 228 IPR001611 GO:0005515
Vimu8g01308 447 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 86 424 - -
Vimu8g01308 447 Gene3D Ribonuclease Inhibitor 267 395 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01308 Vimu-Chr8 19680048 19681574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01308 92 420 Leucine-rich Repeat extension Gene Families AT3G24480 49.254 2.03e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01308 - - gsj:114407518 748.043