Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01307 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGAATTTGTTATACCCATCCAGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCCTCCAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGACCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTACTTTACACCAACTTTGGAAAGAACAGAAAGCCAGAAAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTCTCCAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGCAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATTGCTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATCACAACTTTCACTCATCATCCTTTGGACATTCACCATCTAAAACCTGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCAACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGACAGAGAGCACAGCATGTAGTTCATCATCATCAACAACAACAACATCAGCAACATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCATCACATCCCATCTCCACCATTATTTCTCCACCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAACAGCAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATGACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1353 0.4449 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIATHRDEMSAVVGVPPITTFTHHPLDIHHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCEEVHERQRAQHVVHHHQQQQHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSMTNPQEAEWLKYSSYWPDPDNPDHHG 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01307 450 MobiDBLite consensus disorder prediction 215 254 - -
Vimu8g01307 450 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vimu8g01307 450 FunFam NAC domain-containing protein 73 56 212 - -
Vimu8g01307 450 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vimu8g01307 450 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vimu8g01307 450 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 338 IPR044799 GO:0003700
Vimu8g01307 450 MobiDBLite consensus disorder prediction 215 246 - -
Vimu8g01307 450 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01307 Vimu-Chr8 19669382 19673063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01307 11 447 NAC Transcription Factor Family AT5G56620 53.419 2.95e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g01307 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01307 - - gmx:100795246 795.038