Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01300 ATGGGAAGGGCTCCATGCTGTGACAAATCTATCGTGAAAAAAGGGCCATGGTCTCCTGATGAAGATGTCACCCTCAGAACCTACCTTGAGAAACATGGCACTGCTGGAAATTGGATAGCCCTCCCCAAGAAAGCAGGCCTCATATTAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCAACCTTTATGGCACCATTGGAAGCAGGCAAGTGGTCCCTCATAGCAGCTCAACTTCCCGGAAGAACAGACAATGATGTCAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTCTAGCAGGAAACACTAGTAGTAGTAGTACTGTTGCCACAAGCTACAACACTGGCACTGTCAGCAGTACTAGTTCTTCTGACCAATTCTCATCTTCTACTATTCAACCTCAAGTTGAGGCCTTTGTGTTGAATCAGAAACTGATGAACTCAGCTTGGTTTGACTCCTACAATATTTTGGATCTGGAAAAAACACCAATTTCAGTTCCTCTTCCAATGCCTGAGGAATTAGTATCATTTAATTATAGTGCACCACCCTCTGATGAAATTTCATTGCCAACTTTCAATGCAGCTCCATTAGCACAGCAGAATGAAGATACACAATGGTTTGGCTATGACTATGCAGAGGAAGATGATCCAAATTTACTTGCATTTGTGCTTGACGATCTGCTGATGAATCATGGGTCAGCCTCTTCTGATCACATTGCTTCGTCATGTGTGGCTAACCAAGACTCGTTCTACTCATCAAAAAGTTGA 777 0.426 MGRAPCCDKSIVKKGPWSPDEDVTLRTYLEKHGTAGNWIALPKKAGLILSLEVSLKRKTKLSATFMAPLEAGKWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGNTSSSSTVATSYNTGTVSSTSSSDQFSSSTIQPQVEAFVLNQKLMNSAWFDSYNILDLEKTPISVPLPMPEELVSFNYSAPPSDEISLPTFNAAPLAQQNEDTQWFGYDYAEEDDPNLLAFVLDDLLMNHGSASSDHIASSCVANQDSFYSSKS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01300 258 SUPERFAMILY Homeodomain-like 14 98 IPR009057 -
Vimu8g01300 258 SMART sant 13 99 IPR001005 -
Vimu8g01300 258 Gene3D - 58 123 - -
Vimu8g01300 258 Gene3D - 8 57 - -
Vimu8g01300 258 MobiDBLite consensus disorder prediction 107 131 - -
Vimu8g01300 258 ProSiteProfiles Myb-like domain profile. 9 97 IPR001005 -
Vimu8g01300 258 CDD SANT 16 97 IPR001005 -
Vimu8g01300 258 Pfam Myb-like DNA-binding domain 72 95 IPR001005 -
Vimu8g01300 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 101 IPR017930 -
Vimu8g01300 258 PANTHER OS09G0431300 PROTEIN 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01300 Vimu-Chr8 19624833 19625859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01300 1 150 MYB Transcription Factor Family AT5G57620 43.275 5.36e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g01300 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01300 K09422 - gmx:778160 255.758