Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01298 ATGGGTGATCCATGTGAGCCAAAGAATCACTCTTGGGAAGGCTTAATATGCAACTATAGCACTTCAGTTCCTCCCAGAATTATATCTCTGAATATGAGCTCCAGCAGTTTGAGCGGAGCATTAACTTCTGCCATTTCCAATCTCTCGTCGCTGGAATCTTTTGGCGATTTGGTAACAATGGCTGATGCAAGAAAAATAAACATTTGTAGGGATTTAAAGGACAATCTATTTTCTGGTTCAGTTCCTGTCACTCTTTTAGAAAGATCAAGGTCTGGGTTACTTACATTGAGGGTGGATGATCAAAATCTCGGTCACTCAGGAGGGAGCAATAGAACTGTTAAAATTGTTGTTCCCATAGTTGTATCAGTATCAGTTTTAGTTATATTGGTTGCTTTCATTCTCTTTAGGAAATTCAAAAGAAATGAACGATCAGATGAGGAGATCAGTATGCTGAACAAAAGAGGGAAAAATGTAACAACGAAGAACTGGCAATACACGTATTCGGAAGTCTTGGAAATCACCAACAACTTTGAAAAGGTCATTGGCAAAGGAGGATTTGGAATTGTGTATAGTGGGCAGATGAAAGATGGCAAAGAAGTTGCAGTTAAGATGCTTTCTCCATCATCATCTCAGGGCCCAAAAGAATTTCAAACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCGTTGGTTATTGTGATGATGATAACAAGATGGCTCTCATATACGAGCACATGACCAATGGCAGCCTGAAAGATTTTCTCTTTCTCTCAGATGGAAATTCACATTGCTTGAGTTGGGAAAGGAGAATACAGATAGCAATCGATGCCGCTGAGGGGTTGGATTACCTACACCATGGTTGCATGCCACCAATAGTACACAGGGATGTAAAGACAGCAAACATTCTTTTAAGTCAAGATTTAGAAGCCAAGATAGCAGATTTTGGTCTCTCCAAGGAGTTTAAGAAAGATAACCAAAAACAACAATCTCATGTGATTGATACTGATGCTACAAATGACAAATCTGCAATAATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTAGGGGGTCTGAATGAGAAAAGTGACATCTATAGCTTTGGAATTGTTCTACTTGAATTAATCACAGGTCGCCCTGCAATATTTAAAGGCAACACAATAATGCACATACTTGAGTGGATAAGACCTGAGCTTGAAAGAGGAGAATTGAATAAAATTTTAGATCCAAGGCTGCAAGGAAAATTTGGTGCAAATTCTGGGTGGAGAGCTTTAGGAATAGCTATGCAATGCTCTGCATCAACCTCCATCCAGAGACCTACAATGAGTGTTGTCATAGCAGAGTTAAAACAGTGTTTGACAATAGAATCTCCTAGTAACACTGAAACATTTGTGTCCCCTCCAAAACAAATCTACACTGAATTCTACAGTTCATCAGAAGCACAGTCTTATAATAGTGAATCTATCACCTATCCTTTCCCAAGATAG 1509 0.393 MGDPCEPKNHSWEGLICNYSTSVPPRIISLNMSSSSLSGALTSAISNLSSLESFGDLVTMADARKINICRDLKDNLFSGSVPVTLLERSRSGLLTLRVDDQNLGHSGGSNRTVKIVVPIVVSVSVLVILVAFILFRKFKRNERSDEEISMLNKRGKNVTTKNWQYTYSEVLEITNNFEKVIGKGGFGIVYSGQMKDGKEVAVKMLSPSSSQGPKEFQTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEHMTNGSLKDFLFLSDGNSHCLSWERRIQIAIDAAEGLDYLHHGCMPPIVHRDVKTANILLSQDLEAKIADFGLSKEFKKDNQKQQSHVIDTDATNDKSAIMGTTGYLDPEYYKLGGLNEKSDIYSFGIVLLELITGRPAIFKGNTIMHILEWIRPELERGELNKILDPRLQGKFGANSGWRALGIAMQCSASTSIQRPTMSVVIAELKQCLTIESPSNTETFVSPPKQIYTEFYSSSEAQSYNSESITYPFPR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01298 502 Pfam Protein tyrosine and serine/threonine kinase 177 454 IPR001245 GO:0004672|GO:0006468
Vimu8g01298 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Vimu8g01298 502 Gene3D Ribonuclease Inhibitor 2 108 IPR032675 -
Vimu8g01298 502 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Vimu8g01298 502 Gene3D Phosphorylase Kinase; domain 1 148 250 - -
Vimu8g01298 502 Gene3D Transferase(Phosphotransferase) domain 1 251 473 - -
Vimu8g01298 502 FunFam Leucine-rich repeat receptor-like protein kinase 153 250 - -
Vimu8g01298 502 SMART serkin_6 175 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01298 502 PANTHER OS07G0107800 PROTEIN-RELATED 1 464 - -
Vimu8g01298 502 ProSiteProfiles Protein kinase domain profile. 175 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01298 502 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 251 470 - -
Vimu8g01298 502 CDD STKc_IRAK 181 458 - -
Vimu8g01298 502 SUPERFAMILY Protein kinase-like (PK-like) 159 492 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01298 Vimu-Chr8 19617004 19620480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01298 2 463 Receptor kinase-like Gene Family AT4G29180 47.942 1.94e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu8g01298 PK_Tyr_Ser-Thr 9.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01298 - - gmx:100793137 789.645