Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01279 ATGGTGGCGTTGGTCAACTCAAGATTGAAGAGGGAACAATGCAACCGCACAAAACACGATTCCAGCTTCTCCAATTGGAAGATACTGATCGGCCCTTCTGATTGGGAAGATCATTCCAAAGGAAAGGAAGGTTGTGTAAGATACAGGATTCATAACCTTCCTCAAGAATCGAATCCAGGGGTGTATGAGCTTGGAATTGCTGTGTCCAATGGTGGTTTGGGGCGTGAAATTTCCAAGCTTACCCCTCATTCTCACCGCATAGTGGTGGTTTACCTTGGACAAGCTGACAATGTGAGAATAAGACTCCAGCGTTATGGCAGAACAGGTGATCATCTGCAGAATGGCTGTTGGAATGGTTCTTCTTCCCAAAAGGGGCGCCCCTTGTTTGAGGAAGTGTTTTCACAAGGATTCTCAATCGTTTATAGATGGGCTCCTATGCAAAACAAAGAAGATGCCCTGCGAACAGAAGCTCGGCTGCTCAGTACATTTGATTATGCGTGGAACACAAACAGTAATGGTATCCGGAGGCCTGAAGAAATTCTTCAAAAGCTTCAAAAAATTGCTTCAGGCACTAGAACACTTTCAGATGTGACCAAAGTGCTACTACCATTTACTCAGAAGCAAGTGGGCATCCGAATTAAATCAAGCAAGCTACCTCAGGCAGATGACAAGTTAGATGAAGAAGACAATGGCAGCTATAATTTCCTATCTCGAGTATTCAGTTTTAACAGATCACGTCCTAGGATAGTTCAAAGTACCACTGGTGTCGTTCAGGAACAGGAGAATGCTAAAATTTGTGGAGTGGCATTGGGTGATGGTTTGATTTGTAGAAGGCCACCAGCTGAGAAAAGATTGAGGTGTCCCGAACACAAAGGAATGAGAGCTAATGTTTCCATTGCCGAATCAGAGAGGAATGTTTCACAAACAGTGGTTGGGAGTCCTGTTGATGAAGGTCTGACAGACACAAATATATGTGGAATCATCTTAAATGATGGCTCCACTTGTAGAAGGAAACCAGTTGAAGGAAGGAAAAGGTGTCATGAGCATAAAGGTATGAGAATTGGTGCATCTGTTCATAAAAAAAGCAACGGATACAGATACCAAAATGCCAGCCATGTTGTAGAAGATTCTCTGCAAACACTGGTAGGGAATCCTGTTGATGAGAGTATCTCGAACACAAATATATGTGGAATCATCTTAAATGATGGTTCTGCCTGTACAAGACAACCAGTTAAAGGAAGAAAAAGATGCCATGAGCACAAAGGAAGAAGAATTCATGTATCACGATCCTTTCATGTAAATCAGAAATAA 1311 0.4256 MVALVNSRLKREQCNRTKHDSSFSNWKILIGPSDWEDHSKGKEGCVRYRIHNLPQESNPGVYELGIAVSNGGLGREISKLTPHSHRIVVVYLGQADNVRIRLQRYGRTGDHLQNGCWNGSSSQKGRPLFEEVFSQGFSIVYRWAPMQNKEDALRTEARLLSTFDYAWNTNSNGIRRPEEILQKLQKIASGTRTLSDVTKVLLPFTQKQVGIRIKSSKLPQADDKLDEEDNGSYNFLSRVFSFNRSRPRIVQSTTGVVQEQENAKICGVALGDGLICRRPPAEKRLRCPEHKGMRANVSIAESERNVSQTVVGSPVDEGLTDTNICGIILNDGSTCRRKPVEGRKRCHEHKGMRIGASVHKKSNGYRYQNASHVVEDSLQTLVGNPVDESISNTNICGIILNDGSACTRQPVKGRKRCHEHKGRRIHVSRSFHVNQK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01279 436 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 311 370 IPR038909 GO:0003677|GO:0006355
Vimu8g01279 436 Pfam GIY-YIG domain-containing protein 23 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01279 Vimu-Chr8 19528693 19530492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01279 2 425 HRT Transcription Factor Family AT5G56780 40.625 3.59e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Vimu8g01279 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01279 - - gmx:100784450 589.341