Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01278 ATGGTAATAGTTGAGATGAAGCAAAAGGATTGTTACAGAAAGGTGACAGGGAAAGTGGTGGTGGTTGCAGTTGAAGCAACGAAAGAAGTTTCAAGGAATGGTTTGATGTGGGCTTTGACTAATGTTGTTCAACCAGGAGATTGTATTAAGCTGCTGGCTGTCATTCCGCCTTTCTGCTCAAACATCAGGGCACTGGGTTTCTCTGGGCTTGCTTTTGCTACTGATTGTATCACTACTCAGTGGAGATCCCGTTTAGGAACTGCCTCAGATCAAAAAGAAGTTTTTGTGAATTCATGCTCCCAGATGGTGCTTCAACTTCATCAGTTTTATGATCCAGAGAAGATAAAGATCAGAATCAAAATTCTTTCTGGTTCTTTTTGTGGAGCAGTGGCAGCTGAAGCCAAGAGAGCCAAATCAAGCTGGGTGATATTGGACAGAAAATTGAAAAATGAAAAGAAATACTGCATGGAGGAGCTGAATTGTAGTGTTGTAATCATGGAGCGATCTGGGCCAAGCGTTCTACGATTGAATTTGATCCTTTCAACAAATATGGAGCACAATGCATTTCCAAGAAACTTCAAAGGCAAATCTGAACATGCAAATACAATGAAGTGTCCAATTGTTACTCCTGGAAGTAGTCTAAAACAAGGGTCAAAGACTGGTAGCATCATTGGAACACCATCGACACCTCGTACTTCGACTTCACCATTTTATGAATATGGTAATGATTATGGACGAAGGAAAGATTTACCCTTTTCTCAGAACGAGGTGAAAAATGTGGAGGAAGGTGTATCCAATTCAGAGAGTGAAATTATTATGAGTTTGTCATCCTGCGGATCATATTTTCAGCCATGGATTTCAAATGCAATTTGTGGTGATGAAGAGTTTTCAAAAAACATTAACATTAACGAGGCTCTGGTTTCTCCCACCGAAGCATTGGTTCATAAATTGGATCATGATCCTGTCTTAGGACTGCTTAACTGTAAAATTGATGTGAACATAAGCAGAAGTGTCAGAGAAGCAATTTCACGAGGCCCAAATGGCACTATTGCCTCACCTCCATTGTGCTCTATTTGTCAGCATAAGGCACCTTTATCTGGGAATCCTCCAAGATGGTTTACATTTGCTGAACTGAAACTTGCCACTGCTGGATTTTCACAGGAAAATCTTTTGGCAGAAAATGAGGTTGGATCTGTACACCGTGGAGTCCTATCTGATGGGCAGGTTGTTGCTATCAAGCAGTGTAAATTAGCTGCTACTGAAGATGATGAAGAATTATCTTTACAGGTTCAGGTCTTAAGCTGCACACAACATCGTAATGTAGTGATGCTAATTGGGTTTTGCGTGGAGTATGGAAGAAAAATCCTGGTTTATGAATATATCTGCAATGGATCTCTGTATTCTCATCTTCATGAAAAGAATGAAAATGTACTGAAATGGTCTGCACGGAAGAAAATTGCTCTGGGAGTAGCTCGTGGGTTGAGGTACCTTCATGAAGAGTGTAGAGTGGGTTGTATTGTGCATGGCGACATTAGACCCTGCAATATCTTCCTTACTCATGACTTTGAGGCATTGCTATGTCTAAACTTTAATATGAAAATGCATAGGTATTTGGCTCCAGAATATACTGAAAATGGTGAAATCAGTGAAAAAGCTGATGTGTACTCGTTCGGGGTGCTATTACTAGAGCTTCTTACTGGACGCAAAGCTTTGGATGGAAGCCATCATTGCCTACATGAATGG 1743 0.4062 MVIVEMKQKDCYRKVTGKVVVVAVEATKEVSRNGLMWALTNVVQPGDCIKLLAVIPPFCSNIRALGFSGLAFATDCITTQWRSRLGTASDQKEVFVNSCSQMVLQLHQFYDPEKIKIRIKILSGSFCGAVAAEAKRAKSSWVILDRKLKNEKKYCMEELNCSVVIMERSGPSVLRLNLILSTNMEHNAFPRNFKGKSEHANTMKCPIVTPGSSLKQGSKTGSIIGTPSTPRTSTSPFYEYGNDYGRRKDLPFSQNEVKNVEEGVSNSESEIIMSLSSCGSYFQPWISNAICGDEEFSKNININEALVSPTEALVHKLDHDPVLGLLNCKIDVNISRSVREAISRGPNGTIASPPLCSICQHKAPLSGNPPRWFTFAELKLATAGFSQENLLAENEVGSVHRGVLSDGQVVAIKQCKLAATEDDEELSLQVQVLSCTQHRNVVMLIGFCVEYGRKILVYEYICNGSLYSHLHEKNENVLKWSARKKIALGVARGLRYLHEECRVGCIVHGDIRPCNIFLTHDFEALLCLNFNMKMHRYLAPEYTENGEISEKADVYSFGVLLLELLTGRKALDGSHHCLHEW 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01278 581 SUPERFAMILY Protein kinase-like (PK-like) 366 575 IPR011009 -
Vimu8g01278 581 PANTHER OS01G0750732 PROTEIN 230 581 - -
Vimu8g01278 581 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 357 460 - -
Vimu8g01278 581 ProSitePatterns Tyrosine protein kinases specific active-site signature. 506 518 IPR008266 GO:0004672|GO:0006468
Vimu8g01278 581 Gene3D Transferase(Phosphotransferase) domain 1 461 581 - -
Vimu8g01278 581 Pfam Protein tyrosine and serine/threonine kinase 388 570 IPR001245 GO:0004672|GO:0006468
Vimu8g01278 581 ProSiteProfiles Protein kinase domain profile. 385 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01278 581 Gene3D Phosphorylase Kinase; domain 1 357 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01278 Vimu-Chr8 19524425 19526729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01278 372 581 Trihelix Transcription Factor Family AT5G38560 42.857 2.68e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu8g01278 PK_Tyr_Ser-Thr 6.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01278 - - vun:114182477 905.975