Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01275 ATGAAGAAAAGCTTCAGCATGGATTCCTTGCCCTTATTATCCTCTCCATCTTCCTCCTTTTCTTCATCAAGAATATCTATTGACGACCATCCTGAAAAACCTTCTGTTGGCTATCTATCAGATTCCGATGGCCTCATTGTTCGACCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGACTGGAGAAGCTGGGAAAAGGTGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGGCTTGCAACCTTGAACAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTGGCAGCTCTAACTGTAAGTCAGGTGATTTGGTTTCTCCTACTAAATCCAAAGGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAAGCACAAGAAACCAAGACGGGTGAGCTGAAAGACAGTGATGATTGTTGTCAAGATGAACAAGGTGCAGATCATGAAGCTGTTATGTGGCTTCATCCTCAGATGAAATCTGCATCAAATAATAGTAGTGCAGCAATTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGCAAGGCTAAGACCATGGAACAAACTAAATCAACCCCTGGTTCCTTCTTTCTTGGACCAATTAGCGTGACTTAA 699 0.4263 MKKSFSMDSLPLLSSPSSSFSSSRISIDDHPEKPSVGYLSDSDGLIVRPQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNCKSGDLVSPTKSKGEIENDVTLSLLQAQETKTGELKDSDDCCQDEQGADHEAVMWLHPQMKSASNNSSAAIPDLELTLSVSKGKAKTMEQTKSTPGSFFLGPISVT 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01275 232 ProSiteProfiles SANT domain profile. 58 106 IPR017884 -
Vimu8g01275 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 104 IPR006447 GO:0003677
Vimu8g01275 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 106 IPR017930 -
Vimu8g01275 232 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Vimu8g01275 232 SUPERFAMILY Homeodomain-like 52 106 IPR009057 -
Vimu8g01275 232 SMART sant 54 104 IPR001005 -
Vimu8g01275 232 FunFam transcription factor MYB1R1 56 107 - -
Vimu8g01275 232 MobiDBLite consensus disorder prediction 1 43 - -
Vimu8g01275 232 PANTHER TRANSCRIPTION FACTOR KUA1 1 188 - -
Vimu8g01275 232 Gene3D - 56 108 - -
Vimu8g01275 232 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Vimu8g01275 232 MobiDBLite consensus disorder prediction 1 25 - -
Vimu8g01275 232 CDD SANT 57 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01275 Vimu-Chr8 19512739 19513889 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g01275 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01275 - - pvu:PHAVU_004G171200g 347.051