Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01268 ATGAATGGTTGGGTGCTACGACAGTTTGGCAAAGGTGGCCGGGATTCTTCGGTTTCCCCTCTCATTCTTCTTCTCCGTTCCTACCGCACTCGCCGCTCCACACCCACCCCACCGGAGATTCCTTTTCAGCCCAAACTGGCTAACGCCGTCGATCTCATCGGTCAGCTACTCACGCCTCTTCAGTTCCACGAATCTCCCGAAGGCAACGCCTGGGCCACCGCCGTCATCACCCGCCAAGAGTCCCCTTGTTCTCCTTTTCTCTCGTACGCTGCTCTCTCTGTTTCCTTTCTCTTCTTCGCTGTTCTTATAATAACTACACTATCTCCCCATTTCAGGATTCCGCTTCTATTCAAGGGTGATCTCGCTCATACCGCCAAATGCCATCTCAAACTCAATGATTTCATCCACATTGCTGGAAATCTCACCACTGATGATGATCATCCACTACACCCCCAACAAAACCACCATCAAAGCAATATCCAGGTTATGGTGCAAACCCTGAACTTTGTTCAAGGATATCCCCAACTCAACACTACATCCGCATCTTCAACCACCAAAATACTTCCTTTCTCCCAAAGTGAGAAGCATGACATCAATCCATCAAGGAAGAATATCCGTGCTAAGAAGAGTAAAGAGCTGGACAAAGACAATTCTTGGAAGGATCTCCTTGATAACCCCGTTGAATGGTGGGATCTGCGTTCAACAGAGGAGAATCCAAAAGGTGCAGCTTTTGAAAGAAAGACAAATGGTGAATTACTCTTTATCAATAGCTCAACTCCCAAATGGGTCCATGAGAAATTAGAGTTAGTGACAATTGATTTGAAACCTGAACCAAAACACTCAATATCCTCTGCGAAGAAAAGCCCAGATTCTTCAATGAGTTCTTGGATAGACCTTTTAGATAAGCCAAAGCAGTGGTATGATTTCCGTGACAGCAAACAAAATGGATTGGTACATCCAAAGCACCCTGATTTCAAGCGCAAGGATGGCAGTGTTTCCCTCTGGCTTGGCAAGGGTGAAACATGGCTTTTACCCACACTGAAAGGGCTTGAATTTGAAGTTCCCGTTCTTAAATCCAAAAAAGCAAAGGATAGTAAAGGTGGTGATGAGTACTGGAATGATTTGGTGCAAAATCCGGCTAAATGGTGGGATAATAGAGTAAATAAGAGGAATGAAAAAGCTCCTGATTTCAAGCACAAAGATACTGGTGAAGGGCTGTGGCTTGGTTCTTCACCAAGTTGGGTGTTAGACAAATTGCCGCCAGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGTGTCAGATGCGGCCGTCGCAGCTTTCACCTCCAGAAGAGTCGCTGTGCTGCGTGTGCTTTCCCAGCAGCACGCACTAGAAAATATAACTGGAGCGTCAAGGCCATTAGGAGAAAGACCACTGGAACTGGAAGAATGAGGTACCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAACGGCTACCACTGCCTAA 1548 0.4729 MNGWVLRQFGKGGRDSSVSPLILLLRSYRTRRSTPTPPEIPFQPKLANAVDLIGQLLTPLQFHESPEGNAWATAVITRQESPCSPFLSYAALSVSFLFFAVLIITTLSPHFRIPLLFKGDLAHTAKCHLKLNDFIHIAGNLTTDDDHPLHPQQNHHQSNIQVMVQTLNFVQGYPQLNTTSASSTTKILPFSQSEKHDINPSRKNIRAKKSKELDKDNSWKDLLDNPVEWWDLRSTEENPKGAAFERKTNGELLFINSSTPKWVHEKLELVTIDLKPEPKHSISSAKKSPDSSMSSWIDLLDKPKQWYDFRDSKQNGLVHPKHPDFKRKDGSVSLWLGKGETWLLPTLKGLEFEVPVLKSKKAKDSKGGDEYWNDLVQNPAKWWDNRVNKRNEKAPDFKHKDTGEGLWLGSSPSWVLDKLPPGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGTATTA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01268 515 SUPERFAMILY Zn-binding ribosomal proteins 422 475 IPR011332 GO:0006412
Vimu8g01268 515 MobiDBLite consensus disorder prediction 192 211 - -
Vimu8g01268 515 Hamap 50S ribosomal protein L37e [rpl37e]. 422 473 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu8g01268 515 ProSitePatterns Ribosomal protein L37e signature. 424 443 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vimu8g01268 515 PANTHER 60S RIBOSOMAL PROTEIN L37 422 512 - -
Vimu8g01268 515 MobiDBLite consensus disorder prediction 196 211 - -
Vimu8g01268 515 Pfam Ribosomal protein L37e 423 473 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu8g01268 515 Gene3D - 422 507 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vimu8g01268 515 FunFam Ribosomal protein L37 421 507 - -
Vimu8g01268 515 ProSiteProfiles Single-strand binding (SSB) domain profile. 46 171 IPR000424 GO:0003697
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01268 Vimu-Chr8 19480212 19484751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01268 423 515 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 84.946 2.91e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01268 - - vun:114180308 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01268 8 19480212 19484751 Vimu8g01268 8 19480212 19484751 ECH