Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01262 ATGAAGACGCATCCTCCGCAGACCGACGGTGGCTCCGCCGCTCCCAATCCCAATCCCAATCCCTCCCAAGAGAGCAGGAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTTAATCTTCCTCCCTCCTCCACACACGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTCTCAAGAAAGATGTTGACGCTCAAATTCCCAACTATCCCAATCTTCCCTCAAAGTTACTCTGTCTCCTTCACAATCTCACTCTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACGCTTCAACCGGTTCCTTCTGTAATTTACTGCTCTCGCTTACTCATTCTTTGCATCTCCTCTTCTTTTTCACACTGTTCTAATCATCTCTTCGCATTGCAGTTCGACAAGGATGCTCTGTTAAGATCGGATCTTGCTCTCAAGTCTACCAAGCCACAACCCGACTTCTTCTGTAAACAGCTCACCGCCAGTGATACCAGCACTCACGGAGGTTTCTCAGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCGCAAGAACTCGTGGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGGCACTTGCTTACTACTGGATGGAGTCTATTTGTCAGCGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCCAGTGACAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCCGCAAACAGTAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCGGTGTACAGCCACCAACCGTCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACGAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCCGTGCGATGGAAAAACTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCCGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATCGAACCAGTAACTGCTCCATTTTTCCTCTGCCCGCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGACTTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGGGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACATGCAGCAACATCCTGCACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCCTTACCGGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCCGCTCCACAAATTTCTCAGTCAAACAATGTAGCCTTCAATACTCACAGACTACTTCAGACTGCTCAACAGCTGGATCAACTTCAGAAGCTACCATCTACATCTAGCACATTAGGAACAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATACCACAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAACCCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAATTTGATCCAGTCCCCTATCCCCGATCATGTTCAACAATTACAGATGTCTGACAATCAGATTCAGTTGCACTTGTTACAAAAGCTTCAACAACAAAAACAAACGCACTTGGCACAGCAAACAGTGTTGCAGCAGCCTACTCAGCTTAATCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCACTAACACCTGGTCAAGTTCTAGAAATACCTCCTATGCTTCAAAATTCACTGCCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAATATTCAATTCCCTCAGCAGTCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCACATGGGACTTCTTCCTACCCCTACTACAAATAACCAACTTTCTGCTGGTGGCAGTAGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCTTCTTGCTCCACCTCACCTTCTGCAAATAACTGTGCCAGTGCACTTCCACCATTGATAAATTCTCGATTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAACCGAAGTCTGAAGTTAAACCTTCTCTGAATATTTCCAAAAGTCAGAATCAAGGGCATTTTGGTCTTCAGTCATACTTGAATGGTAGTGCTGTCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAATAATCCATTAGCTTACAATCCACATCCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAACTTCTCTTCAGAAGCCCTGCTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAGTCATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTTTTGAATAGGGGTACATGGGCTCCACCACCAGCACCACCTCCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACGTATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACGCGGTATTCAGGTTATGAAGAGCTTAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGGCAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGTAA 3306 0.4537 MKTHPPQTDGGSAAPNPNPNPSQESRSINPELWQACAGPLVNLPPSSTHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSVIYCSRLLILCISSSFSHCSNHLFALQFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANSSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDDLSDFDNIFKRTMPWLGDDMGMKDPQGLPGLSLAQWMNMQQHPALASSLQPNFAPSLPGSILQNIPGADISRQLGFSAPQISQSNNVAFNTHRLLQTAQQLDQLQKLPSTSSTLGTVLPPQQQLGDITQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQTHQMHRSLSQNPSQQQTIIGQSQQQNLIQSPIPDHVQQLQMSDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLNQIQDQQRQILDKTHNLSRALTPGQVLEIPPMLQNSLPEANSISNQITKANFQNNIQFPQQSKLQQQQPGLLSEMSGHMGLLPTPTTNNQLSAGGSSILNGAAGAGQSVITDDIPSCSTSPSANNCASALPPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDLQPKSEVKPSLNISKSQNQGHFGLQSYLNGSAVHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHPMLFRDNSQDGEVQADARGNIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEALLGNYENNRDAQQELSSSMVSQSFGVPDMAFNSIDSTIDDSSFLNRGTWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWE 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01262 1101 Gene3D - 160 263 IPR015300 -
Vimu8g01262 1101 MobiDBLite consensus disorder prediction 1006 1027 - -
Vimu8g01262 1101 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu8g01262 1101 SUPERFAMILY DNA-binding pseudobarrel domain 152 291 IPR015300 -
Vimu8g01262 1101 MobiDBLite consensus disorder prediction 1 27 - -
Vimu8g01262 1101 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu8g01262 1101 FunFam Auxin response factor 326 397 - -
Vimu8g01262 1101 MobiDBLite consensus disorder prediction 1013 1027 - -
Vimu8g01262 1101 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Vimu8g01262 1101 CDD B3_DNA 161 253 IPR003340 GO:0003677
Vimu8g01262 1101 ProSiteProfiles PB1 domain profile. 1033 1101 IPR000270 GO:0005515
Vimu8g01262 1101 Gene3D - 1028 1101 - -
Vimu8g01262 1101 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Vimu8g01262 1101 Gene3D - 326 397 - -
Vimu8g01262 1101 SMART B3_2 162 264 IPR003340 GO:0003677
Vimu8g01262 1101 FunFam Auxin response factor 160 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01262 Vimu-Chr8 19432899 19440691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01262 24 505 B3 DNA Binding Superfamily AT1G19220 68.454 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu8g01262 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01262 - - ccaj:109803454 1826.99