Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01260 ATGTCGAGGATGAACTCAGAGAAGAAGCTCGGTGCAGGACGTGTGGTGGCTGTGGCCATTGAGAATAACAAGACCAGCCAACATGCTGCCAAGTGGGCAGTAGACAACCTTCTTCCCAGGGATCAATGTCTCTTGCTCATCCATGTCAGACAAAAATCATCCTCAGCGAATTCCGCCAACGAAGCTGTGGGTGACAACGAATCCAAGGAACTCTTCGAATCGTTTAGAGTTTTCTGCAATAGAAAAAGTATACAATGCAGAGAAGTGTTGTTGGAGGACATGGATATATCTAAGGCATTATTGGAAAACGTTTCTGTGAATTCCATAGAGTTTCTGGTACTTGGGGCGCCATCAAGGGATCCCATTGAAATTAATATTCATGACAGGAGATTTAGAACAACAGATGTTCCAAGCTCTGTGTCAAAGGGTGCGCCACCATTCTGCACAGTGTATATAATTTCTAAAGGAAAAATCTCGAGTGTGAGATCTGCTACTGCTCCATTGGCTCCTAAACCTGCTGCACCACGTAACCAATTGCAGCCACAACAGCCACAGCCACTACAGCCACAGCCACGCTACCAGCCACTGATGCGAAACCCTGAAGGACTTTTGGAATCTCATCAAACCCGCAACTACCCACCACGACCTTCACAAGGGAGTGGAACACATAAGATGGTGTTGGATGATGATGATATCATATCACCATTCACAAGGGCTGGCAAATCATACGAGTCTTCAAAACTTCCAGATTCTGACATATCATTTGTGAGCAGCGGAAGGCCAAGCATTGATCGAATATTCCCGACAATGTACGACGATTTGGACACTGCGAGTGGAAGGCTTTCGGGTGTTTCGGATTCTGACACCAGAAGCTTCGCTTCTTCATTGTCCTCGCAAGGAATGGATGACTACTCCTTCTCCTCGCAATCAAGGTTATCAGACTGCACGGATGATGTTGAATTCGAGATGAGGAGGCTGAAGCAGGAACTGAAGCAGACGATGGATATGTACAGCTCGGCCTGCAAAGAAGCTATGACTGCAAAGCAGAGGGCAATGGAGCTTCAACGTTGGAAAGCGGAAGAACAGAAGAGATCGGAAGATTCGCAAACGGTTGATGCGTCGGCCGTACAATTCATGGAGATGGAGCAGGATAGAATCAGAGCAGAAGCCCTTGAAAAAATCGCCGAACTGGAAGCACAGAAGAGAATGACCAAAGTAGAGAGAAGGAGACCGAGTGAAAGCTTTGGACACGGCCCTGCCATGTACAGAAGGTACACCATTGAGGAAATTGAAGAGGCAACAAATATGTTTTCGGACTCTCTTAAGATCGGCGAAGGAGGTTATGGTCCTGTCTACAGGAGTGAACTCGATTGCACCCAGGTTGCCATCAAGGTCTTGAAGCCAGATGCAGCTCAAGGGCGCGAGCAGTTTCAACAGGAAGTAGAAGTGTTGAGTCGCATAAGGCATCCAAACATGGTTCTGTTGCTGGGGGCATGTCCAGAGTATGGTTGTCTTGTGTATGAGTACATGGCGAATGGAAGCTTGGATGATTGCTTGTTCAGGAGAGGAAGCTCACGTCCTCCTCTTCCATGGCAGCTAAGGTTCCAAATTGCCGCAGAGATAGCAACAGGTCTGCTTTTCCTCCACCAGACAAAACCAGAGCCACTGGTCCACCGTGACCTAAAACCGGGCAACATTCTCCTTGACCGGAACTACGTGAGCAAGATCAGTGACGTGGGGTTGGCAAGGCTGGTGCCTCCTTCGGTTGCTGACACTGTAACACAGTATCGCATGACTTCCACTGCCGGAACCTTCTGCTACATCGACCCGGAGTACCAGCAAACGGGCATGCTGGGAATCAAATCCGACATATACTCTCTGGGGATCATGCTTCTGCAATTGGTGACGGCGAGGCCTCCGATGGGTTTGACTCATCATGTTTCGAGATCCATCGAGAACGGAACTTTTCCCGAGATGCTTGACCCAGCTGTTGAGGACTGGCCAATTGAACATGTCATGCATTTCGCAAAGCTTTCCCTGGGATGTGCTGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTCTTGCCTGAGCTCAATAAGCTCAGGGCATTTGCTGAAGATAGCATGTCGCCTATGATGATGTTTGGACTTCGAACCGGAGGAAGTGGCGGCGGCGGTGGAGGGTATATTCCAAGAAACAGTAACCCATCATCATCCACACATTCTGTCAGTGCCAGTTCCACTTAG 2256 0.4845 MSRMNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPRDQCLLLIHVRQKSSSANSANEAVGDNESKELFESFRVFCNRKSIQCREVLLEDMDISKALLENVSVNSIEFLVLGAPSRDPIEINIHDRRFRTTDVPSSVSKGAPPFCTVYIISKGKISSVRSATAPLAPKPAAPRNQLQPQQPQPLQPQPRYQPLMRNPEGLLESHQTRNYPPRPSQGSGTHKMVLDDDDIISPFTRAGKSYESSKLPDSDISFVSSGRPSIDRIFPTMYDDLDTASGRLSGVSDSDTRSFASSLSSQGMDDYSFSSQSRLSDCTDDVEFEMRRLKQELKQTMDMYSSACKEAMTAKQRAMELQRWKAEEQKRSEDSQTVDASAVQFMEMEQDRIRAEALEKIAELEAQKRMTKVERRRPSESFGHGPAMYRRYTIEEIEEATNMFSDSLKIGEGGYGPVYRSELDCTQVAIKVLKPDAAQGREQFQQEVEVLSRIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGSSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTARPPMGLTHHVSRSIENGTFPEMLDPAVEDWPIEHVMHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRAFAEDSMSPMMMFGLRTGGSGGGGGGYIPRNSNPSSSTHSVSASST 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01260 751 Gene3D Transferase(Phosphotransferase) domain 1 510 715 - -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 734 751 - -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 281 309 - -
Vimu8g01260 751 ProSiteProfiles Protein kinase domain profile. 437 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01260 751 SMART serkin_6 437 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01260 751 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 122 - -
Vimu8g01260 751 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 412 509 - -
Vimu8g01260 751 Pfam Protein kinase domain 440 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01260 751 Coils Coil 387 407 - -
Vimu8g01260 751 Coils Coil 323 343 - -
Vimu8g01260 751 SUPERFAMILY Protein kinase-like (PK-like) 415 697 IPR011009 -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 204 218 - -
Vimu8g01260 751 PANTHER OS02G0152300 PROTEIN 15 718 - -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 727 751 - -
Vimu8g01260 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Vimu8g01260 751 Gene3D HUPs 2 153 IPR014729 -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 167 226 - -
Vimu8g01260 751 MobiDBLite consensus disorder prediction 177 193 - -
Vimu8g01260 751 Gene3D Phosphorylase Kinase; domain 1 411 509 - -
Vimu8g01260 751 FunFam Os07g0541700 protein 510 601 - -
Vimu8g01260 751 CDD STK_N 15 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01260 Vimu-Chr8 19429069 19432225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01260 1 719 Receptor kinase-like Gene Family AT1G78940 51.459 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu8g01260 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01260 - - gmx:100785729 1111.67