Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01259 ATGCAAATTAGGACCGAATCGATGCAAATCAATACGATGGAGTTGGAGTCAGACTCAGACTCTGAAGCTGCTGCTATATGGAAAGAAATTGAGGCTTCAGAGAGCTTCCTTGTTTGTTCTATGTACCAAGAAGCCGCATCGTTGGCATCCTCTATTTTGGAACGCTTGCGTCATGGCTCCTTTGCAACTCTAGATATGCTGGAATCCACTGCCATGGTGCTGGTCCAGGCACTTATACATCTTCCCAGGACTCAACACATTATTGATCAACTTAGACTGCATTTCATTTCAGTCAAAGCTATTCCTCCCCGTGTTCTTCTTACAGGTGTAACAATTGCAGCTGAGACTAGTAACCAAAAAATTAATAACAGAGAGGCAGAAGAGTCAATTACTGATGCAATTCAGCAAGAACAGCTGACAGCAGATCCTGATGATCATGGAGACAGGAAAAGCACTAGAATTAAAATAACTAACTCTAGAGCTTGTTTTCAAATTGCACAAGGTTCTGGGCTTGGTGTTCAAGAATTTGTCGAGGATTTCCTTAATGGATGGATTCTTGAAGATGCAAGATATTGTGCAGTCATTACAGAGACGAATGTAGAGGATGGAAGTATAAAAGAAAGACACATAGTTCTTGAAATTAATGAATATTTGGAAGTTGTCGAGCTTTATGCCATCACACTTCTTGCAACAGTTCGAAAAGACATAGATCTTGCAATCTCCTGGGTTGAGGATGCGTCATTGCCTGAGGAAAATCGACAGGGACTTCTGAGAAGGTTACGTTCCATGCATTCTCCTGAAAGTACTATTCTGTCACAACCTTTTCCTCAGTCACCTACAAATAGAAATGAAGATTATTCTTTGAAAGAACGAAATATTTCTGAAGGATTACCTCAAGCCTTCAAAACCAAACATCTAAACAATGAAAAGGATAGGTCCAAGAATGCTCTTATAAAATTGTCTAAACAAATAGAAGCATGTTTCTGTTGCTTCCGTGGTATCCATTTGAAGATTGGCTCTACTAAGTTGGTCATAACTAGTGGGAAGATCATGCTTGGCTTTTTACTAGTGTTCATCTACTATGTTTTCAGAAAGAAGCAAGCCACTATAAAAAGGATTTTAAGAAGACAGGCTATTTCCGTAAAGAGGGCTTTGGTAGATTTGTGGCAGCTTGCATTCTCGTACCAAGTGAATCCTCTGGCAGCTGTTCAACCTCCATCTGTTGCAACACGTCAAGACAGGCCTGTCTGGAGGGCGTGCACGGCGCACCCTTCCCTGTGCGTGTGCCAACCCTGTCCCTTCACTATGGCACTCTCCACTTCTTTCACTCCATTCACGTTTCTCCTTTCATCTTCATTTCTATCGCATATTCTTCTCATCGTAACTGCTTCAGACAAAGAATTGCTCCTCGGATTCAAAGACTCCATTGAAAACAAACATGCCTTGTCTTCCTGGAACGAATCCGTCCCTCCATGTTCTCCCAAACAACCTAACTGGCCTTACATTCAGTGTTATAAAGGACACGTCTGGGGTTTGACGCTCGAGAACATGAGACTCAAAGGGGTCGTTGACGTTCAAAACCTCCAGAAGCTACCCTATCTCCGAACCTTAAGCCTCAAGAACAATGATTTTAACACTGAATGGCCTTACATCAACGGCATTCTGGGTTTGAAGGCCCTTTTTCTTTCCAATAACAAGTTTTTTGGTGAGGTTCCTGCTCAGGCTTTTCAGGACATGAAATGGTTAAAGAAAATCTATTTGTCCAACAACCGCTTCACCGGTCATATTCCAACTTCCCTCGCATCCATGCCCAGGCTTATCGAGTTGAGGCTCGAAGGAAACCAATTCACCGGCTCCATACCCAATTTTCAACGTCCATTGCAATCTTTTTCTGCAGCTGATAATAAATTAGAGGGACAAATACCAGAGAGCCTCCGTGACCTGCCAGTTTCAGCTTTCTCTGGTAATGAAGGGCTATGTGGAGCACCATTAGAAGCATGCAAGTCCAAAAAGCTATCACTTCTGAGTATTATTGTGACTGTTGTTCTTGTTCTTGTAGCACTGGTTGTTATTGGAGCAGTAGTGTTGTTAATCCTTCGCCGGAGAAGAGAGCAGCTGCCAGATGTGTCTGAGGAAGATTCACCGTCAATGTCCCACAAGAAAGCAAGAAGTAGGGAACCATCGGAGGAAGGAAGTCACAGGTCCCGCTCCTCGAGCCGCATCAGCAAAGGAGACACCATGATGTTATCGTTTGTGAGGGATCACAAAGACCAGTTTGATTTGCATGAACTACTGAGTGCCTCGGCTGAGGTACTGGGCAGTGGTTGTTACAGCTCTTCCTACAAGGCTTCTTTGTTAAATGGACCAGTTATGGTGGTCAAGAGATTCAAGCAAATGAACAATATCGGAAGGGAAGAGTTTCACGAGCACATGCGACGGTTTGGACGCTTAAATCATCCTAATCTGCTTCCTCTCATTGCCTACTACTACAGAAAGGAGGAGAAACTCTTCGTTACTGACTTTGTTCACAATGGCAGCTTGGCTGTTCGCCTCCATGGATACCAAGCTCTAGGGCAGCGAAGCCTGGAGTGGGGAAGTAGGTTGAAGATAGTGAAAGGCATAGCAGAAGGACTTCAATATCTTTACAGGGAGATGCCAAACTTAATAGCGGCGCATGGACATCTGAAATCCTCGAACGTTCTTCTGAATGAATCTTTGGAACCCCTTCTGACGGACTATGGGTTGGTACCAGTGATAAATCAAGACCTTGCTCCTGACATAATGGTGATCTATAAGTCCCCAGAGTATTTGCAGCATGGTCGCATTACAAAGAAGACTGATGTGTGGAGTCTTGGGATAATTATTTTGGAGATTCTAACGGGAAATCTTCCTGTTAACTTTCTACAAGGAAAAGGAAGTGATTTGAGTTTGGCAAACTGGGTCCATTCGGTCTCGGAAGAGTGTAGCAGTGAGGTGTTTGATAAGGATATGGAGATAACCAGAAACAGTGAGGGAGAGATGATAAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAAGGGACGCTGACAAGAGATGGGACTTAAAAGAAGTTGTAGATAGAATTCATGAAGTAAACGAAACTGATAAGGAGGATGAATATTCCCGTTCTTCTTCTAATGCTAGTGAAGTTGAAATCAAGCAGACTCAGTCAGGTGAAGTTAGTTTCTCCATAGATATGGCTGAATGA 3228 0.4315 MQIRTESMQINTMELESDSDSEAAAIWKEIEASESFLVCSMYQEAASLASSILERLRHGSFATLDMLESTAMVLVQALIHLPRTQHIIDQLRLHFISVKAIPPRVLLTGVTIAAETSNQKINNREAEESITDAIQQEQLTADPDDHGDRKSTRIKITNSRACFQIAQGSGLGVQEFVEDFLNGWILEDARYCAVITETNVEDGSIKERHIVLEINEYLEVVELYAITLLATVRKDIDLAISWVEDASLPEENRQGLLRRLRSMHSPESTILSQPFPQSPTNRNEDYSLKERNISEGLPQAFKTKHLNNEKDRSKNALIKLSKQIEACFCCFRGIHLKIGSTKLVITSGKIMLGFLLVFIYYVFRKKQATIKRILRRQAISVKRALVDLWQLAFSYQVNPLAAVQPPSVATRQDRPVWRACTAHPSLCVCQPCPFTMALSTSFTPFTFLLSSSFLSHILLIVTASDKELLLGFKDSIENKHALSSWNESVPPCSPKQPNWPYIQCYKGHVWGLTLENMRLKGVVDVQNLQKLPYLRTLSLKNNDFNTEWPYINGILGLKALFLSNNKFFGEVPAQAFQDMKWLKKIYLSNNRFTGHIPTSLASMPRLIELRLEGNQFTGSIPNFQRPLQSFSAADNKLEGQIPESLRDLPVSAFSGNEGLCGAPLEACKSKKLSLLSIIVTVVLVLVALVVIGAVVLLILRRRREQLPDVSEEDSPSMSHKKARSREPSEEGSHRSRSSSRISKGDTMMLSFVRDHKDQFDLHELLSASAEVLGSGCYSSSYKASLLNGPVMVVKRFKQMNNIGREEFHEHMRRFGRLNHPNLLPLIAYYYRKEEKLFVTDFVHNGSLAVRLHGYQALGQRSLEWGSRLKIVKGIAEGLQYLYREMPNLIAAHGHLKSSNVLLNESLEPLLTDYGLVPVINQDLAPDIMVIYKSPEYLQHGRITKKTDVWSLGIIILEILTGNLPVNFLQGKGSDLSLANWVHSVSEECSSEVFDKDMEITRNSEGEMIKLLKIALACCERDADKRWDLKEVVDRIHEVNETDKEDEYSRSSSNASEVEIKQTQSGEVSFSIDMAE 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01259 1075 MobiDBLite consensus disorder prediction 707 742 - -
Vimu8g01259 1075 MobiDBLite consensus disorder prediction 1052 1069 - -
Vimu8g01259 1075 MobiDBLite consensus disorder prediction 1042 1075 - -
Vimu8g01259 1075 SUPERFAMILY L domain-like 464 663 - -
Vimu8g01259 1075 Pfam Protein kinase domain 769 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01259 1075 Gene3D Transferase(Phosphotransferase) domain 1 842 1064 - -
Vimu8g01259 1075 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 454 1044 IPR046959 -
Vimu8g01259 1075 ProSiteProfiles Protein kinase domain profile. 766 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01259 1075 Gene3D Ribonuclease Inhibitor 459 551 IPR032675 -
Vimu8g01259 1075 Gene3D Ribonuclease Inhibitor 552 673 IPR032675 -
Vimu8g01259 1075 Pfam Leucine rich repeat N-terminal domain 464 504 IPR013210 -
Vimu8g01259 1075 Gene3D Phosphorylase Kinase; domain 1 732 841 - -
Vimu8g01259 1075 Pfam Leucine rich repeat 557 616 IPR001611 GO:0005515
Vimu8g01259 1075 SUPERFAMILY Protein kinase-like (PK-like) 770 1038 IPR011009 -
Vimu8g01259 1075 MobiDBLite consensus disorder prediction 707 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01259 Vimu-Chr8 19419908 19427720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01259 464 1074 Receptor kinase-like Gene Family AT5G35390 47.261 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu8g01259 Pkinase 1.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01259 - - gmx:100785189 792.341