Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01251 ATGGTCTGCTGCAGGGAGATGATCCAGCATAGGCCTTACACACAAAAGGTGGATGTATATAGCTTTGGGATTGTTTTATGGGAACTCATCACTGGAATGCTTCCGTTTCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTCACCAAAAACGTTCGCCCTATCATACCCAATGACTGCTTACCTGTTCTCCGTGAGATCATGACAAGATGCTGGGATCCCAACCCTGATATTAGGCCACCGTTTACTGAAATTGTAGGAATGCTTGAGAACGCAGAGACTGAGATCTTGACAACGGTTCGGAAGGCCCGATTTAGGTGTTGCATGACACAACCAATGACTGCTGACTGA 354 0.4689 MVCCREMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVTKNVRPIIPNDCLPVLREIMTRCWDPNPDIRPPFTEIVGMLENAETEILTTVRKARFRCCMTQPMTAD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01251 117 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01251 117 Pfam Protein tyrosine and serine/threonine kinase 5 89 IPR001245 GO:0004672|GO:0006468
Vimu8g01251 117 SUPERFAMILY Protein kinase-like (PK-like) 6 90 IPR011009 -
Vimu8g01251 117 PANTHER SERINE-THREONINE PROTEIN KINASE 6 92 - -
Vimu8g01251 117 Gene3D Transferase(Phosphotransferase) domain 1 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01251 Vimu-Chr8 19361298 19361651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01251 6 117 MAP Kinase Kinase Kinase AT2G24360 78.571 9.42e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu8g01251 PK_Tyr_Ser-Thr 1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01251 - - adu:107490079 228.024