Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01250 ATGCTGGAAGGTGGTGCGAAATTCCCGGGAATAATAGACCTCAACAAGCAGAACGATGACTACTATGATTTCTCTAAGGGCTTTTACCATAAGCTTGAGGAGGGCGCGGATATGTTAATTGACAGCATTGGGAGCTTGCAAACAAGTAACCATGGAGGATCTGTTGCAATGTCCATTGATAATAGCAGTGTTGGCTCCAATGATTCTCATACTCGTATATTGAACCACCAAGGGTTGCGGAGACGCCCCAATGATAATTCCTCCATTGCACACAGTGTCAATCATCGAGGAAGAGTTACACATGCTTTGAGTGATGATGCTTTGGCTCAAGCACTAATGGACAGTAGTTCCCCAACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGGGCTTTTGGGAAACTCTACAGAGGTACTTACAATAATGAAGATGTTGCTATTAAAATCTTGGAGAGGCCTGAAAATGATTCAACAAAGGCTCAGTTGATGGAACAACAGTTTCAGCAGGAGGTGATGATGCTGGCTACATTGAATCATCCTAACATTGTTCGTTTTATTGGTGCATGCCATAAGCCAATGGTATGGTGTATTGTTACAGAATATGCCAAAGGGGGTTCAGTTCGGCAATTTTTAATGAAGCGACAAAACAGATCAGTGCCCCTTAAATTGGCTGTTAAACAAGCTTTGGATGTTGCACGTGGGATGGCATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCCGATAATCTCTTAATTTTTAGTGACAAATCAATTAAAATTGCTGATTTTGGCGTTGCTCGGATTGAGGTGCTAACGGAAGGAATGACACCTGAGACAGGAACATACCGTTGGATGGCTCCAGCACAGGTTCAGAGACTCCGCAGAACCAAGGGTAGCCATTTTCTGAACCAGAGAAAGAAAAATTATACCAAAGGAGAGGAGAATCGTGAGGATCTGGTTAGTGCTTCAGAGTGGTATGTTGGCATTCTGTTGGTGGCAAGTCAAGACTTGGGGAATTTTGAGAAATTTGGAACAGTGCCACCTAAAAGGGATTTAGAATCTGCTGGACGGAAAGGAACGACCGAGCAACAATGA 1146 0.4328 MLEGGAKFPGIIDLNKQNDDYYDFSKGFYHKLEEGADMLIDSIGSLQTSNHGGSVAMSIDNSSVGSNDSHTRILNHQGLRRRPNDNSSIAHSVNHRGRVTHALSDDALAQALMDSSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKILERPENDSTKAQLMEQQFQQEVMMLATLNHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFSDKSIKIADFGVARIEVLTEGMTPETGTYRWMAPAQVQRLRRTKGSHFLNQRKKNYTKGEENREDLVSASEWYVGILLVASQDLGNFEKFGTVPPKRDLESAGRKGTTEQQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01250 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vimu8g01250 381 SUPERFAMILY Protein kinase-like (PK-like) 122 310 IPR011009 -
Vimu8g01250 381 Gene3D Transferase(Phosphotransferase) domain 1 211 329 - -
Vimu8g01250 381 SMART serkin_6 135 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01250 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 305 - -
Vimu8g01250 381 Gene3D Phosphorylase Kinase; domain 1 126 210 - -
Vimu8g01250 381 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Vimu8g01250 381 Pfam Protein tyrosine and serine/threonine kinase 136 313 IPR001245 GO:0004672|GO:0006468
Vimu8g01250 381 ProSiteProfiles Protein kinase domain profile. 135 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01250 381 MobiDBLite consensus disorder prediction 362 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01250 Vimu-Chr8 19358168 19360831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01250 15 308 MAP Kinase Kinase Kinase AT4G31170 72.483 1.17e-148 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu8g01250 PK_Tyr_Ser-Thr 2.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01250 - - vum:124839343 601.282