Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01243 ATGGGAGGCGAAGGAAGGGCGGCAATGAAGAAGAAGAAGAACGCAAAATCTGGGGGCTTCGAGTCACTGGGTCTGAGTCCCAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTTCCCACCCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCGGACGTCGTTGCCATGGCTCGCACCGGCTCCGGGAAAACGGCTGCGTTTCTCGTTCCCATGATTCAGCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCTCCCACTAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTATCAGTTTGTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGACTCATGCATCATTTGTCTGAAGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTAAGAGACCCTCAGCTTGTTCGCCTCGATCTGGAGACTAAGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGACAGGAGGAGAAGTACCCCGCCCTGCTGTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGTGACATGGATCAGGATGCTCGAAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATCGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGGACTGGTACCGCATATTCTTTTGTGACTCCTGAGGATATGGCCTGCCTCTTGGATCTTTATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGCTCTTGCAGGATATGGATGGTGTAATGTCTAGATGTGACCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTTTTTCAGACAGAGTCAGGGAAGTTATGGATACTTCTGCAGAACTGGAATTATTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTTCTAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCGGGAAGGGCTGCATCCAATGTTCATGAAGGTGTTAGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCATTTTGGAAGCTGAAGGTGAAGCAGCTAAATCAAAGCATCAACAGAGTAACATTGTTGTTGCTCCCCCTCTTCCAGGGATTAAAATCAACGCTTCTCTTGGCCCTTTCGGGCAATGGGGTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAGTATGGAAAAGGAGGAAATCGAATCAGAACTCAATCCTTCCATGGAGAAAGGAAGAAAAGCACATGGTTCTAAGAGAAAACCCCAAAGTTTCAAGGATGAAGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCCGCTGTCCTTGATCTAGTCGCAGATGATGGTGCTGGTATTCACAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATTGTGTTGCTGCAAACGGAAAGATAAAAACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAACGTTCACATGGTAAGATATCACTTAGAGGGACAAACGACGGTGATCCTCAGGAATCAACAAGTGTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGAAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGAAGGAAAGGCAAATAG 2385 0.4524 MGGEGRAAMKKKKNAKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIQRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMACLLDLYLFLSKPIKPAPTEEELLQDMDGVMSRCDQAMANRETIYGRFPQKVIDLFSDRVREVMDTSAELELLQRTCKNAFRLYSKTKPLPSKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQSNIVVAPPLPGIKINASLGPFGQWGDVMKRKRAIHENIINLVHEQQQSKDSMEKEEIESELNPSMEKGRKAHGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIHKQRSMYHWDKRSKKYIKLNNGDCVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDPQESTSVAGSYQRGRRNFRGSKKQHSMPNAHVRSEIKDMDQIRKERQKKANRTSYIKSKSTKGKKFGKNGKRRKGK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01243 794 Pfam DBP10CT (NUC160) domain 642 703 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vimu8g01243 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 373 IPR027417 -
Vimu8g01243 794 MobiDBLite consensus disorder prediction 569 591 - -
Vimu8g01243 794 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vimu8g01243 794 MobiDBLite consensus disorder prediction 746 770 - -
Vimu8g01243 794 SMART DBP10CT_2 642 704 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vimu8g01243 794 MobiDBLite consensus disorder prediction 715 730 - -
Vimu8g01243 794 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vimu8g01243 794 CDD SF2_C_DEAD 244 365 - -
Vimu8g01243 794 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vimu8g01243 794 MobiDBLite consensus disorder prediction 703 794 - -
Vimu8g01243 794 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vimu8g01243 794 Gene3D - 4 225 IPR027417 -
Vimu8g01243 794 SMART ultradead3 37 244 IPR014001 -
Vimu8g01243 794 SMART helicmild6 275 356 IPR001650 -
Vimu8g01243 794 Gene3D - 237 463 IPR027417 -
Vimu8g01243 794 MobiDBLite consensus disorder prediction 566 607 - -
Vimu8g01243 794 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 707 - -
Vimu8g01243 794 CDD DEADc_DDX54 18 223 IPR033517 -
Vimu8g01243 794 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Vimu8g01243 794 MobiDBLite consensus disorder prediction 771 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01243 Vimu-Chr8 19297671 19302513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01243 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.202 2.10e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01243 K14808 - gmx:100806274 1350.11