Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01199 ATGGAGTCAGAAGAAGCATCCACCGCCAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATACTCCCCCGTCCCGGCACCAACTCCCTCTTCTACGCCGGCGGCGAAACCCGTATCCTCTCCATCCAGCGCCGCACCCTCGCAACGCTTTCCTCCTTCCGCAGCCATCTCTCCACCCTCCTCTCTCTCAAATACCCCTTCACTCTCAAGTACCAGCTCCCCCACCTCCACCTTGATTCTCTCATCTCCCTCGCCTCCGACGAAGACCTCCACATCCTCCTCGACGAGTACCACAATTCCTCTTCCCGCATCAGACTCTTCGTCTTCCCTGCTTTCCGCCACCCCAAAAGCGAGTCATGGTTCTTGGACTCCCTCAAGAGCTCCTCCATCATGCACCACTTCTTCCCTCTCGACACCGCCTCCTCTTTCGCTTCCTTCACCTCTCTTCTTCCTCCATCCATCCCCTCATCTCTTCCAAGTGATAGTATTGTTTCCGGCATCATTTCGCAGCGGCAGAATATGTGTTATCAGGACCCTGCGCTTCATGTTTCGGAGGCCAGACTCAGTGCTCAGACTGTTCAAGTTGAAAGTCAAAACCTCTTTGTTTCCAATAATGCAAATTTGAATGCACGCTATTCTTCATTTCCACGGTTTAATTCAGTGGTGCAATCTGCTACAAGCAATTTACCCCTTCATACTCCTCTAAACTCATTACCAAGTATTTATCAGCAACCTCGTCCTTCCACGCATCTGGTTTATCAAACCAATCCTATTTGCCCTGTATACCTCGTACCTGTTACTTTGCCTATGACTGCCTCTACTCAAGCATCAATGAATCTAAATGTTTCATCCATAGGTTCCCGTGTACCACGTAACTCTACCTCTGACTCTCAGAACTATTTAACACACACAGAAACTGCAGCACTCGTTCACGTCCCTTACAACGGAAATCAGGCACGGGAGATTGATGTTAGTCCAATGCATCATCGTCAGTCTCAATCTCAGAATATATCTATTGCTTCCGTGGAATCATCCGAGAGTGGAAATGGACTTGACAACAACCTTACTCGTGATCAGATATACAAATCTCAGCCTCTACCTCCGGCATTACCTTTTAAACACCAAACCGGGAGAAAAGCCACCCCAGAGTTGTTGTCTGAAGCTCTTGCTCAGTTGCATGTGGATAGCCTCAAGACAGAAACATCACAGCCACATTGA 1218 0.4926 MESEEASTAKLRLMCSYGGHILPRPGTNSLFYAGGETRILSIQRRTLATLSSFRSHLSTLLSLKYPFTLKYQLPHLHLDSLISLASDEDLHILLDEYHNSSSRIRLFVFPAFRHPKSESWFLDSLKSSSIMHHFFPLDTASSFASFTSLLPPSIPSSLPSDSIVSGIISQRQNMCYQDPALHVSEARLSAQTVQVESQNLFVSNNANLNARYSSFPRFNSVVQSATSNLPLHTPLNSLPSIYQQPRPSTHLVYQTNPICPVYLVPVTLPMTASTQASMNLNVSSIGSRVPRNSTSDSQNYLTHTETAALVHVPYNGNQAREIDVSPMHHRQSQSQNISIASVESSESGNGLDNNLTRDQIYKSQPLPPALPFKHQTGRKATPELLSEALAQLHVDSLKTETSQPH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01199 405 PANTHER OS05G0427100 PROTEIN-RELATED 7 293 - -
Vimu8g01199 405 SUPERFAMILY CAD & PB1 domains 28 111 - -
Vimu8g01199 405 SMART PB1_new 25 111 IPR000270 GO:0005515
Vimu8g01199 405 MobiDBLite consensus disorder prediction 328 361 - -
Vimu8g01199 405 Pfam PB1 domain 31 110 IPR000270 GO:0005515
Vimu8g01199 405 MobiDBLite consensus disorder prediction 326 383 - -
Vimu8g01199 405 CDD PB1_UP2 14 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01199 Vimu-Chr8 18942561 18943859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01199 8 109 MAP Kinase Kinase Kinase AT1G79570 41.667 2.66e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01199 - - var:108318981 702.205