Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01181 ATGTCCTCAACGAGGTTCGGATTCTTCTTCTGCCATTGTCAAAGGCTCTTCCCAGCACTATCTTCTTCTTCTTCCTTTGCTTTTTCACGCCCAAGACTCCTCTCTACCACTCCATACCCTCTCCAATATGAACTCATTATCAACCGTCCATCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCCGAACCTGAAGACCCCGCTTCCGAGACTCGCCCCCAACTAGACAAGGCCCAGAGGAAGTACTATAACAAGCGCAGGAAAAGGATGTACGGCTCGGATTCCGACCAAGAGGCAGCTGGGCGCCGTGACGAAGGATTCGTGGAGTTGAAGCCTGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAACCGGGACAGTCAAATATCAACAGTGCAAATGTTGATGTTAATGCAGATGGACGGGGCGAGGGTAGGAAGAAAGATGTTGGGATGGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAAAAGGGCGAGGGTGAGAGTGGACGTAAAGAACTGAAGGAGAAGAAGGTTGAGGACTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGAGATTGGTGAGGACTATGGATACGTGGTTCAATCAGATCATACAGTAATTATTCAGGGCGGGGGGAGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTCGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTGTGTGTTGGCAAAGCAACGAAACTGGTAGACAGATACCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAAGAATGCTTTGTCCTTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCCAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTAACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGAAAGGCTCTTGACAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCCGACGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACTAAAAGTTATCTCTAA 1512 0.4689 MSSTRFGFFFCHCQRLFPALSSSSSFAFSRPRLLSTTPYPLQYELIINRPSYPRPPTVRPIDSPEPEDPASETRPQLDKAQRKYYNKRRKRMYGSDSDQEAAGRRDEGFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNINSANVDVNADGRGEGRKKDVGMDEKLVFFEGKEKGEGESGRKELKEKKVEDFFKGLKKVPGSNKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKEIGEDYGYVVQSDHTVIIQGGGSWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01181 503 FunFam tRNA pseudouridine synthase B 281 502 - -
Vimu8g01181 503 MobiDBLite consensus disorder prediction 65 80 - -
Vimu8g01181 503 SUPERFAMILY Pseudouridine synthase 295 498 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu8g01181 503 Gene3D Pseudouridine synthase 283 502 - -
Vimu8g01181 503 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 154 501 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu8g01181 503 Pfam tRNA pseudouridylate synthase B C-terminal domain 456 499 IPR032819 -
Vimu8g01181 503 Hamap tRNA pseudouridine synthase B [truB]. 283 503 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu8g01181 503 Pfam TruB family pseudouridylate synthase (N terminal domain) 305 455 IPR002501 GO:0006396
Vimu8g01181 503 CDD PseudoU_synth_EcTruB 295 497 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vimu8g01181 503 MobiDBLite consensus disorder prediction 51 80 - -
Vimu8g01181 503 NCBIfam tRNA pseudouridine(55) synthase TruB 294 494 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01181 Vimu-Chr8 18785190 18788978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01181 296 477 NAC Transcription Factor Family AT3G57150 32.967 2.04e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01181 K03177 - gmx:100793939 725.317