LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01181	ATGTCCTCAACGAGGTTCGGATTCTTCTTCTGCCATTGTCAAAGGCTCTTCCCAGCACTATCTTCTTCTTCTTCCTTTGCTTTTTCACGCCCAAGACTCCTCTCTACCACTCCATACCCTCTCCAATATGAACTCATTATCAACCGTCCATCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCCGAACCTGAAGACCCCGCTTCCGAGACTCGCCCCCAACTAGACAAGGCCCAGAGGAAGTACTATAACAAGCGCAGGAAAAGGATGTACGGCTCGGATTCCGACCAAGAGGCAGCTGGGCGCCGTGACGAAGGATTCGTGGAGTTGAAGCCTGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAACCGGGACAGTCAAATATCAACAGTGCAAATGTTGATGTTAATGCAGATGGACGGGGCGAGGGTAGGAAGAAAGATGTTGGGATGGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAAAAGGGCGAGGGTGAGAGTGGACGTAAAGAACTGAAGGAGAAGAAGGTTGAGGACTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGAGATTGGTGAGGACTATGGATACGTGGTTCAATCAGATCATACAGTAATTATTCAGGGCGGGGGGAGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTCGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTGTGTGTTGGCAAAGCAACGAAACTGGTAGACAGATACCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAAGAATGCTTTGTCCTTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCCAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTAACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGAAAGGCTCTTGACAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCCGACGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACTAAAAGTTATCTCTAA	1512	0.4689	MSSTRFGFFFCHCQRLFPALSSSSSFAFSRPRLLSTTPYPLQYELIINRPSYPRPPTVRPIDSPEPEDPASETRPQLDKAQRKYYNKRRKRMYGSDSDQEAAGRRDEGFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNINSANVDVNADGRGEGRKKDVGMDEKLVFFEGKEKGEGESGRKELKEKKVEDFFKGLKKVPGSNKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKEIGEDYGYVVQSDHTVIIQGGGSWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL	503

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g01181	503	FunFam	tRNA pseudouridine synthase B	281	502	-	-
	Vimu8g01181	503	MobiDBLite	consensus disorder prediction	65	80	-	-
	Vimu8g01181	503	SUPERFAMILY	Pseudouridine synthase	295	498	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Vimu8g01181	503	Gene3D	Pseudouridine synthase	283	502	-	-
	Vimu8g01181	503	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	154	501	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Vimu8g01181	503	Pfam	tRNA pseudouridylate synthase B C-terminal domain	456	499	IPR032819	-
	Vimu8g01181	503	Hamap	tRNA pseudouridine synthase B [truB].	283	503	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Vimu8g01181	503	Pfam	TruB family pseudouridylate synthase (N terminal domain)	305	455	IPR002501	GO:0006396
	Vimu8g01181	503	CDD	PseudoU_synth_EcTruB	295	497	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Vimu8g01181	503	MobiDBLite	consensus disorder prediction	51	80	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01181	Vimu-Chr8	18785190	18788978	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01181	296	477	NAC Transcription Factor Family	AT3G57150	32.967	2.04e-18	86.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01181	K03177		-	gmx:100793939	725.317

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