Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01180 ATGATCTCAATCTCCAAAATTGCGTTGCTACTTTATTTGCATTTAACAATACTTATTCCTTTTGAATTGAAAGGAAATGAGGTTGGAGCTGTAGCTTCGGGAGTAAATGTTTATATTGTTCCTCCTACGAAAGTAGATATTAAGTTGACAATTCATTGCAAAGACAAGCATCATGATCTTGGGACTTACATATTGAATTATGAGGAAATTTATAAATTTAGTTTTAAACCTAATTTCTTGAAGAGGGGTATTTTGTACTTTTGTAGTTTTAAATGGGAAGGAGGAAGTCATTCTTTTGACATTTATAATGAAGATAGAGATAATTGTGATCGATGTGTATGGCGCATATTCGAAACTGGACCGTGTATGCATTATCGTAAGTATGATGTTTGTTTTCGGTGGAAACATTAG 411 0.326 MISISKIALLLYLHLTILIPFELKGNEVGAVASGVNVYIVPPTKVDIKLTIHCKDKHHDLGTYILNYEEIYKFSFKPNFLKRGILYFCSFKWEGGSHSFDIYNEDRDNCDRCVWRIFETGPCMHYRKYDVCFRWKH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01180 136 Pfam Plant self-incompatibility protein S1 45 134 IPR010264 -
Vimu8g01180 136 PANTHER - 37 127 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01180 Vimu-Chr8 18769938 18771830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01180 47 134 Carbohydrate Esterase AT3G16970 37.113 4.47e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01180 - - pcin:129297218 112.849