Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01178 ATGATAACACTTTGTTGGTTGTTAATTCTTGCTTGGCAGTTCAAAGGTAGTTCTGGTCAACTTTTGCCTCACAAAGTTGATGTTAAAATAACCAACATGTTAATACGTAAGGAGTTGACTCTTCACTGCAAAGACAAAAATCATGATCTGGGTTTTGTTAAACTAAAAGTTGGTGAATCATTTACTTTTTCTTTTAATCCTAATTTCTTTGCAGATATAACCTTGTACTTCTGTCGTTTTATATGGATAGGTGGTGATCATCGTTTTGACATTTATGTTGAACATAGGGATCATCATTGTAACAACAATGTATGTTCTTGGCAGATATCTGAGAAAAGACCATGTGATGTTTCATTTGGAGTTCTATCTCGTAAATGCTATCAGTGGGATGGAACTCTACCAGAAACAAATAATACTTTGTCTTCATAA 429 0.3357 MITLCWLLILAWQFKGSSGQLLPHKVDVKITNMLIRKELTLHCKDKNHDLGFVKLKVGESFTFSFNPNFFADITLYFCRFIWIGGDHRFDIYVEHRDHHCNNNVCSWQISEKRPCDVSFGVLSRKCYQWDGTLPETNNTLSS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01178 142 PANTHER - 23 117 IPR010264 -
Vimu8g01178 142 Pfam Plant self-incompatibility protein S1 28 129 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01178 Vimu-Chr8 18765818 18766246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01178 17 140 Carbohydrate Esterase AT3G16970 33.071 3.55e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01178 - - pvu:PHAVU_004G003500g 143.28