Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01177 ATGATGGATTCAATCTCCAAAATGATGAGAACAATTTGTTGGTTGTTAATTCTTGCTTCGGAGTTGAGAGGTAGCGAAAGCACTGATCAATTTTTGCCTCACAAAGTTGCTGTTAAAATAACCAACATGTTAACACTAAAGGAGTTGACTCTTCACTGCAGAGACAAAGATCATGATCTGGGTTTATTTACATTAAACGTTGGCGAATCATTTATTTTTCATGTTATGCCTAATTTCTTTTTGGATAAAACCTTGTACTACTGTCGTTTTATATGGAAAGGTGCTAATCATCGTTTTGACATTTATGTACAACATAGGGATCATATTTGTAACAATAATGCATGTTCTTGGCAGATATTTGAGAAGAGACCATGTGATGTTTCATTTGGAGTTCTAGCTCGTAAATGCTATGTGTGGCCTGGAAGTTCACCACAAACAAATAATACTTTGTATTCATAA 459 0.3442 MMDSISKMMRTICWLLILASELRGSESTDQFLPHKVAVKITNMLTLKELTLHCRDKDHDLGLFTLNVGESFIFHVMPNFFLDKTLYYCRFIWKGANHRFDIYVQHRDHICNNNACSWQIFEKRPCDVSFGVLARKCYVWPGSSPQTNNTLYS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01177 152 PANTHER - 32 127 IPR010264 -
Vimu8g01177 152 Pfam Plant self-incompatibility protein S1 38 139 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01177 Vimu-Chr8 18762500 18762985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01177 33 128 Carbohydrate Esterase AT3G16970 32.323 8.12e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01177 - - pvu:PHAVU_004G003100g 123.635