Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01170 ATGGGATCTGGCAACGAGGTTCACTCAATTGAGGAGTTCAATTTGGAATCAAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGTCCAAAAATTGGAGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCACAACGTTGCTGTTAAGATCATCAACAAGGGAGAAACCCCAGAAGAGATTTCAAGGAGACAGGCTCGGTTTGCCAGAGAGGTTGCCATGCTGTCGAGAGTTCAACACAAAAATCTGGTTAAGGTTTACTTAGATCACCTTGATAGTGATGAACTTGAAAAAGTTGTCTCATTGAAGTTTATTGGGGCTTGCAAAGAACCTGTTATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGAGGCCAAAGTGCTTGGATATGCCCGTGGCTGTTGGATTTGCTCTTGACATTGCCCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGTGATCTTAAACCTGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAATCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCTACCATTTCACCACCAGAGCCTGTTCTTCATCTGCGGATGACTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGATTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA 1113 0.4214 MGSGNEVHSIEEFNLESKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNHNVAVKIINKGETPEEISRRQARFAREVAMLSRVQHKNLVKVYLDHLDSDELEKVVSLKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPSDRPNFSEIIQMLLRYLSTISPPEPVLHLRMTSSDNVVLPPESPGTSALMLGRDDSGETSTDKAEDRPKGFFFCFNQCY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01170 370 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vimu8g01170 370 SUPERFAMILY Protein kinase-like (PK-like) 17 331 IPR011009 -
Vimu8g01170 370 ProSiteProfiles Protein kinase domain profile. 26 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01170 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 304 - -
Vimu8g01170 370 SMART serkin_6 26 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01170 370 PIRSF TyrPK_CSF1-R 114 355 - -
Vimu8g01170 370 PIRSF TyrPK_CSF1-R 11 89 - -
Vimu8g01170 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vimu8g01170 370 Pfam Protein tyrosine and serine/threonine kinase 29 304 IPR001245 GO:0004672|GO:0006468
Vimu8g01170 370 FunFam serine/threonine-protein kinase HT1 125 325 - -
Vimu8g01170 370 CDD STKc_MAP3K-like 32 304 - -
Vimu8g01170 370 PRINTS Tyrosine kinase catalytic domain signature 158 176 IPR001245 GO:0004672|GO:0006468
Vimu8g01170 370 PRINTS Tyrosine kinase catalytic domain signature 232 254 IPR001245 GO:0004672|GO:0006468
Vimu8g01170 370 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Vimu8g01170 370 PRINTS Tyrosine kinase catalytic domain signature 120 133 IPR001245 GO:0004672|GO:0006468
Vimu8g01170 370 MobiDBLite consensus disorder prediction 333 355 - -
Vimu8g01170 370 Gene3D Transferase(Phosphotransferase) domain 1 14 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01170 Vimu-Chr8 18719411 18721754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01170 9 370 MAP Kinase Kinase Kinase AT5G50180 73.757 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu8g01170 PK_Tyr_Ser-Thr 6.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01170 - - gmx:100792887 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01367 6 13300477 13302045 Vimu8g01170 8 18719411 18721754 PCT