LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01169	ATGTTCGATTTTGAAGTGGTGACTTTGTTTTGCAGGAGCGAGCTTAATGACATTGAAGGATTTGCAGGGAAAGTGAAAAATACTACTCTGTCAACTGCTGATCAAATGAAGAACTGTGAAACATATCGTGAATGTCCCAAATGTCATTATCATACTAATAACAGTGATGTTTCTGATGAGTGGTCTGGTTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAAGAGAGAGCAACACGTGTTTATTCATAAGTTCATCCCAACTTTAGAAGGGGAACAAGGGATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAGGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGGCGAAGGAAGCGTAGGAAGATTCATCACCAAGATGGTTTGAGTGAGGAGCATGTTCGCTGGCACAAGACTGGTAGGACCAAATCTGTAATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGACCTAAGGAAGGGTCCAAGACATATAAGACCAATTGGGTAATGCATCAGTACCATCTGGGGAGTGAAGAAGAGGAGAAGAATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAACAGAAGCACTCTGAGAAGAATGAGGAGAATACAGTAGTTGAAGATTCTAACATAGCAGCACAAACAGGTCCAAGTACCCCAAAACCAAATCCCCCTACTCGACCTTGCACAGGCAAATGTGATGACAATTTTGATGAAAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATTACTTGCCCCACCATCTGATGTTCTGGATGAGGATATTAAGGTTGACCCTGCATGGTTGGCTTGTGAATCACAAGCTGATTGTGACTTTCATGGCTTGGAGGAAATCTTTTCAATGTCAGATTCATCTGCACTTTTTAATCATTCAGGATTGGCCTCCACTTTGGATAACACTGCAAACAACATGGTTGCACCTGGAAACAATGATGATTATGCATCTTCAGGAGTTTCTGTGCTAGACACCCTGGAGTTAGATACTCCTTCAGATTTTGATCTTTGTGTAAGTATCAGCTCATCTTTTAGAATTCTCCAATATTGTTGGAAGTCTTACATTAACTAA	1203	0.4015	MFDFEVVTLFCRSELNDIEGFAGKVKNTTLSTADQMKNCETYRECPKCHYHTNNSDVSDEWSGFPVGVKFDPSDVELLKHLEAKCCVGKREQHVFIHKFIPTLEGEQGICYTHPENLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHQDGLSEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRPKEGSKTYKTNWVMHQYHLGSEEEEKNGEYVVSKIFYQQQKHSEKNEENTVVEDSNIAAQTGPSTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGELLAPPSDVLDEDIKVDPAWLACESQADCDFHGLEEIFSMSDSSALFNHSGLASTLDNTANNMVAPGNNDDYASSGVSVLDTLELDTPSDFDLCVSISSSFRILQYCWKSYIN	400

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu8g01169	400	ProSiteProfiles	NAC domain profile.	64	225	IPR003441	GO:0003677\|GO:0006355
Vimu8g01169	400	Pfam	No apical meristem (NAM) protein	65	206	IPR003441	GO:0003677\|GO:0006355
Vimu8g01169	400	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	13	285	IPR044799	GO:0003700
Vimu8g01169	400	MobiDBLite	consensus disorder prediction	244	266	-	-
Vimu8g01169	400	SUPERFAMILY	NAC domain	49	225	IPR036093	GO:0003677\|GO:0006355
Vimu8g01169	400	Gene3D	NAC domain	73	230	IPR036093	GO:0003677\|GO:0006355
Vimu8g01169	400	FunFam	NAC domain-containing protein 8	73	229	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01169	Vimu-Chr8	18712603	18715416	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01169	24	227	NAC Transcription Factor Family	AT1G28470	50.000	1.25e-63	205

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Vimu8g01169		NAM	1.1e-20	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01169	-		-	vun:114182499	671.003

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