Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01169 ATGTTCGATTTTGAAGTGGTGACTTTGTTTTGCAGGAGCGAGCTTAATGACATTGAAGGATTTGCAGGGAAAGTGAAAAATACTACTCTGTCAACTGCTGATCAAATGAAGAACTGTGAAACATATCGTGAATGTCCCAAATGTCATTATCATACTAATAACAGTGATGTTTCTGATGAGTGGTCTGGTTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAAGAGAGAGCAACACGTGTTTATTCATAAGTTCATCCCAACTTTAGAAGGGGAACAAGGGATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAGGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGGCGAAGGAAGCGTAGGAAGATTCATCACCAAGATGGTTTGAGTGAGGAGCATGTTCGCTGGCACAAGACTGGTAGGACCAAATCTGTAATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGACCTAAGGAAGGGTCCAAGACATATAAGACCAATTGGGTAATGCATCAGTACCATCTGGGGAGTGAAGAAGAGGAGAAGAATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAACAGAAGCACTCTGAGAAGAATGAGGAGAATACAGTAGTTGAAGATTCTAACATAGCAGCACAAACAGGTCCAAGTACCCCAAAACCAAATCCCCCTACTCGACCTTGCACAGGCAAATGTGATGACAATTTTGATGAAAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATTACTTGCCCCACCATCTGATGTTCTGGATGAGGATATTAAGGTTGACCCTGCATGGTTGGCTTGTGAATCACAAGCTGATTGTGACTTTCATGGCTTGGAGGAAATCTTTTCAATGTCAGATTCATCTGCACTTTTTAATCATTCAGGATTGGCCTCCACTTTGGATAACACTGCAAACAACATGGTTGCACCTGGAAACAATGATGATTATGCATCTTCAGGAGTTTCTGTGCTAGACACCCTGGAGTTAGATACTCCTTCAGATTTTGATCTTTGTGTAAGTATCAGCTCATCTTTTAGAATTCTCCAATATTGTTGGAAGTCTTACATTAACTAA 1203 0.4015 MFDFEVVTLFCRSELNDIEGFAGKVKNTTLSTADQMKNCETYRECPKCHYHTNNSDVSDEWSGFPVGVKFDPSDVELLKHLEAKCCVGKREQHVFIHKFIPTLEGEQGICYTHPENLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHQDGLSEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRPKEGSKTYKTNWVMHQYHLGSEEEEKNGEYVVSKIFYQQQKHSEKNEENTVVEDSNIAAQTGPSTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGELLAPPSDVLDEDIKVDPAWLACESQADCDFHGLEEIFSMSDSSALFNHSGLASTLDNTANNMVAPGNNDDYASSGVSVLDTLELDTPSDFDLCVSISSSFRILQYCWKSYIN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01169 400 ProSiteProfiles NAC domain profile. 64 225 IPR003441 GO:0003677|GO:0006355
Vimu8g01169 400 Pfam No apical meristem (NAM) protein 65 206 IPR003441 GO:0003677|GO:0006355
Vimu8g01169 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 285 IPR044799 GO:0003700
Vimu8g01169 400 MobiDBLite consensus disorder prediction 244 266 - -
Vimu8g01169 400 SUPERFAMILY NAC domain 49 225 IPR036093 GO:0003677|GO:0006355
Vimu8g01169 400 Gene3D NAC domain 73 230 IPR036093 GO:0003677|GO:0006355
Vimu8g01169 400 FunFam NAC domain-containing protein 8 73 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01169 Vimu-Chr8 18712603 18715416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01169 24 227 NAC Transcription Factor Family AT1G28470 50.000 1.25e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g01169 NAM 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01169 - - vun:114182499 671.003