Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01163 ATGCAAAAGCTGACCAAAAGAATTCTTAGCTTTACCTCTTCAAGCAACCAATCTCGATGCTACAATTACCACAACATTGAGACACAGCAAAGGAAGAAGCTGAAGCAGGTTGTGGAAAGTCTTTGGAATGGTGATGGAGAATCTCAAATTCAAGCAGCTTTGGAGCTTTGCAGATTAAGCAGTAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAGTAGAAGCTGCTCTGTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAAACTTTTCCAAAATTTTTACAGAAACAAGATTCGGATCATCAAATATGGAAGTTTGCCAGTGCTGCTGAGTCTCCTCCATTGTGATAGCCAGAGAGCAGCAGACTTGACTTTGGCAGCCATGCTTACTCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAACTCTTGGTTGGGTTTGTAAACAACAAAGATTATAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACGTGCAAAGAGATTGTTCCACTGATTGTGTCTTCTGGGGTTATGCTGTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCATTATGTGAGGCTGCTAATACTATTGGAGCAATCAGGATACTGGTTGAGACTATTGAAGATGGATCTTCTCTGAGCAAAGAGTATGCAGTGTGTATACTTCTCCTTGTATGTCAGAGCTGCAGAGAGAAATATAGAGGGCTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTGATCATGAGCTTATAGAAAGGATAATGGATGAAATTGAAGCCGAAGGAGAGGAATTGGCAGATACTACTTTGAGGCTGGTAGAGGAGATGATTGCAAAGCTCCATGCTTAA 1110 0.4243 MQKLTKRILSFTSSSNQSRCYNYHNIETQQRKKLKQVVESLWNGDGESQIQAALELCRLSSKQRHKLEESRVMVPLISMLHSENYEAVEAALCALLSLSFGSERKLFQNFYRNKIRIIKYGSLPVLLSLLHCDSQRAADLTLAAMLTLSSCKANKVAIASSGAVQLLVGFVNNKDYSTQSQLDAIATLQNLTTCKEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEAANTIGAIRILVETIEDGSSLSKEYAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQIDHELIERIMDEIEAEGEELADTTLRLVEEMIAKLHA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01163 369 Gene3D - 32 244 IPR011989 -
Vimu8g01163 369 SMART arm_5 60 100 IPR000225 GO:0005515
Vimu8g01163 369 SMART arm_5 110 150 IPR000225 GO:0005515
Vimu8g01163 369 SMART arm_5 194 236 IPR000225 GO:0005515
Vimu8g01163 369 SMART arm_5 151 193 IPR000225 GO:0005515
Vimu8g01163 369 Gene3D - 245 353 IPR011989 -
Vimu8g01163 369 FunFam U-box domain-containing protein 4 242 358 - -
Vimu8g01163 369 FunFam U-box domain-containing protein 4 35 238 - -
Vimu8g01163 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Vimu8g01163 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 240 IPR000225 GO:0005515
Vimu8g01163 369 SUPERFAMILY ARM repeat 34 352 IPR016024 -
Vimu8g01163 369 PANTHER U BOX DOMAIN-CONTAINING 33 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01163 Vimu-Chr8 18576377 18577976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01163 36 322 U-box Gene Family AT3G54790 31.973 3.24e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01163 - - gmx:100778534 509.22