Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01158 ATGGAATCTCCCGGTAACGAGCATGTGGTGGGTGCCGCTGACCCCAACGACGTCGTTACACCTTTCTCCCACAGAGAAGAACCCCACAATTCTCAACCCCTCACCGGCAACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTCATCAAGCACTTTGGGAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACCGGAAAACTGGGCAACCTCGTGGATTCGGGTTTATAACGTATGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCACGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTCAGAGACTTCTTTACTCGCTATGGTGAAGTAAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATCACATTTGATTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCTGCACCTCCATCATCCAAGCGCTACAATGACTCAAGATCTTCATACGGTAGTGCTGGATATGGAGATGCCTATGATGGATTTGGTGGCAATTTTGGAGTTGGGGGTGGTTATAGATCAGGTGGTGCTTATGGTGGCGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGACCCTACAGAGGAGATCCCTCCCTCAGTTATGCCGGTCGATATGGTGGAAGCTTTAGTAGAGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGGTGGTGCCGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGAGGTGGATATGGAGGGACTAGTGGTGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1119 0.4817 MESPGNEHVVGAADPNDVVTPFSHREEPHNSQPLTGNGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYGSAGYGDAYDGFGGNFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLSYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSGGAGAGAYQSGYDGSLGGGYGGTSGGPFYGSSRGGYGAGRYHPYGR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01158 372 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Vimu8g01158 372 SUPERFAMILY RNA-binding domain, RBD 33 120 IPR035979 GO:0003676
Vimu8g01158 372 MobiDBLite consensus disorder prediction 205 226 - -
Vimu8g01158 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Vimu8g01158 372 Gene3D - 42 121 IPR012677 -
Vimu8g01158 372 MobiDBLite consensus disorder prediction 353 372 - -
Vimu8g01158 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Vimu8g01158 372 SMART rrm1_1 131 204 IPR000504 GO:0003723
Vimu8g01158 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Vimu8g01158 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 34 372 - -
Vimu8g01158 372 Gene3D - 123 235 IPR012677 -
Vimu8g01158 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Vimu8g01158 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Vimu8g01158 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Vimu8g01158 372 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01158 Vimu-Chr8 18541126 18544125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01158 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 9.90e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01158 K12741 - gmx:100793209 551.592