Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01143 ATGTTGTTGTTGATTTTTTGTGGTTTTGAGGTAAGTGAGAAGATGATGGCTTCTTCTAGCTACTCGAATTCTCCATGTGCAGCGTGCAAGTTTCTGAGGAGGAAGTGCATGCCAGACTGCATATTTGCGGCATATTTTCCTCCAGAGGAGCCTCAGAAGTTTGCAAACGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATTCTGAACGAGGTGCAACCCTATCAGAGAGAAGATGCTGTGAATTCTTTGGCATATGAGGCAGAAGCAAGGATCAAAGATCCTGTGTATGGCTGTGTTGGTGCCATTTCAGTGCTGCAAAGGCAAGTTCTAAAGCTCCAAAAGGAGCTTGATGCTACAAATGCTGATTTGATCCGCTACAGCACTTGCAGTGAAATGCCAAACAGTAGTAGCAGTAATCATGGAGGAAGAAGCAAGATGAGTAGTGATGATCATGGTGGTGGTGGTTCTTCACATGGTTTAAGCTTCTATTATTCTTCTGCTAATTGGAACAATGATCATTCTGAAAATGGCTACCCCAGAGGAGATATATAA 558 0.4337 MLLLIFCGFEVSEKMMASSSYSNSPCAACKFLRRKCMPDCIFAAYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYSTCSEMPNSSSSNHGGRSKMSSDDHGGGGSSHGLSFYYSSANWNNDHSENGYPRGDI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01143 185 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Vimu8g01143 185 Coils Coil 104 124 - -
Vimu8g01143 185 Pfam Lateral organ boundaries (LOB) domain 25 121 IPR004883 -
Vimu8g01143 185 MobiDBLite consensus disorder prediction 133 158 - -
Vimu8g01143 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01143 Vimu-Chr8 18405102 18406860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01143 19 145 AS2 family AT3G27650 77.165 4.91e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu8g01143 LOB 2.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01143 - - gmx:100820187 271.937