Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01142 ATGTCTGGGTTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTCGACGCCGAGAAGGGTTTCTCGTCAAGTTCAACCTTGGATCCCTGTGATTCTTACACAGTAACCCTCTCTCTCACTGCTGTTCAGTTTGTATTGAAATGGTTTTCGGATGGTGGAACTGTGAACTTGTTGAGTAGATCATATGGGGTTTACAATATCAACGAACTTGGGTTGCAGAAGTGCACATCATCAAGGTCTTTGGATGAAACTGATCACAGTGAGAAAACGTATAAGTGTGCTTCCCAAGAAATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCCATGCATATACCGACACATAGGATTCTGGCATTGAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTAGAATTTCACGGAGCATTTTACACCCCAGATTCAGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCAGATATCTTGAGAATGCATAGAAGGATACCAGAACCTATTCTATCCTTCATGTTTCAGAAGCTACTACATGGTCTAAGCTATCTGCATGGAGTAAGACATCTTGTTCACAGAGACATAAAGCCTGCCAATCTACTAGTAAATTTGAAGGGAGAACCAAAAATTACTGACTTTGGTATTAGTGCCGGCTTAGAGAATTCAGTGGCAATGGTTAGTATATTTTATCTGTGTCAGAAAGTTGCTCCTTTGCAGTGTGCTACTTTTGTTGGAACTGTTACATACATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCGGCCGATATTTGGAGCCTTGGGCTTGCTCTTTTAGAGTGTGGGACTGGAGAATTCCCATATACAGCTAATGAAGGCCCTGTCAATCTTATGTTGCAGATTCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATGCTTGCCTGCAAAAGGATCCAGACACTAGGCCAACAGCAGAGCAGCTGCTTTTGCACCCTTTTATCAAAAAGTATGAGAATGACAATGTAGATTTAGCTGGATTTGTTCGAAGCGTTTTCGATCCTACACAAAGAATGAAGGACTTGGCAGACTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAAGCTTCAATGCCGTGCTCATGGTGAAGATGGAGTGGCAATCAGAGTTTCAGGATCCTTTATAATTGGAAACCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTACCAAAAGAATGGGCACATTTCATGAACAATTCTTAGTGGAACCAACAGGTCTTATAGGATGCTATTCCATTGTAAAACAAGAGCTATACATTAATCAGTAA 1473 0.4168 MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTVTLSLTAVQFVLKWFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDETDHSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHRRIPEPILSFMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMVSIFYLCQKVAPLQCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDACLQKDPDTRPTAEQLLLHPFIKKYENDNVDLAGFVRSVFDPTQRMKDLADWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIATKRMGTFHEQFLVEPTGLIGCYSIVKQELYINQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01142 490 SUPERFAMILY Protein kinase-like (PK-like) 100 381 IPR011009 -
Vimu8g01142 490 SMART serkin_6 98 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01142 490 CDD PKc_MAPKK_plant_like 99 373 - -
Vimu8g01142 490 FunFam mitogen-activated protein kinase kinase 3 180 390 - -
Vimu8g01142 490 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 52 392 - -
Vimu8g01142 490 FunFam mitogen-activated protein kinase kinase 3 70 179 - -
Vimu8g01142 490 Pfam Protein kinase domain 102 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01142 490 ProSiteProfiles Protein kinase domain profile. 98 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01142 490 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Vimu8g01142 490 Gene3D Transferase(Phosphotransferase) domain 1 180 397 - -
Vimu8g01142 490 FunFam Mitogen-activated protein kinase kinase 3 383 489 - -
Vimu8g01142 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vimu8g01142 490 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01142 Vimu-Chr8 18395675 18399265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01142 33 490 MAP Kinase Kinase Gene Family AT5G40440 65.631 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vimu8g01142 Pkinase 1.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01142 K20607 - qsu:112000816 766.918