LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01136	ATGCCTTTCAAATGTCATAGCAACCAGTGCAAGATTGCAGCTTTTGATGTTGTTATCTTGGCAGTGGCCACCCTCTTGTGTTTCTCACATTCAGCAGTGTCTGATCCAAGAATCTCTGAAGTGGGGTTGTACTGTGGCACTCATAGGGCATCACCAAGTGGTAACTATGTTCCTGTTTTTACCAAAGAAATGGAAAGGCTTCAAGAGCTTGTGAGCAAAAGCAACTGGGGCATTCATTCTGAGGAACTGTCATCAACCTCTCGGATATATGGTTTGGCACAGTGCTTCCAAGATCTTTCCAAGGTTGACTGTCTTCAATGCTTTGCAGCCAGTCGCACCAAGCTACCTCGCTGTGTCCCTTCAGTTTCTGGTCATATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACTCTGAGGACACTGACCCTTTGAGAGACACGGTGAACTGCACGACACAGTATGGTGGTGTGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGGAAGAGTGTTGGGAAAGTGGTTGAGAATGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAAGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAACTGTTGGAGAAAAAGGGTGTGGTGATTGCTTGAAGAAAGCTGGAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGAGCCTTGAATTCTGGCTGTTATTTGAGATATTCCACTGTCAAGTTCTACAATCAAGGAGGTGAACATGGTGAAGGAGATGATTCTTCTAGAAAAAGAACCATCATTACAGCAGTCTCAGTCTTGGCTGCAGTTGTTGTAGTTCTCTCTCTCTTGGTCTCTTATGTGGCCTTCACCAAAAAGAGAAAAAAAAACGACTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAGACTCTTGAGAAGGCCACAGATTATTTTAGCACTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTGTTCAAAGGGACTCTCCCAAACGGGAAAGATGTTGCTGTTAAGAGATTGATCTTCAATAATAGACAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATGAATCACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGACCATTTCATTTTTGAAAAGGACAAAACAAGGATTCTAAAATGGAAGCAGAGGTTTGAAATAATTGTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATCAAGAGTAGCAATGTTCTTCTTGATGAGAATCTCCATCCCAAGATTGCAGATTTTGGTCTTGCAAGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTTATTCAAGGACAACTTACAGATAAAGCAGATGTTTATAGTTTTGGAGTGCTTGTTCTGGAGACTGCAAGTGGAAGGAAGAACAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAATTTGGAAACTTTACCAATCAAACAGATTGGCTGAAGCTGTTGATCCATGCTTGGGAGATGAGTTTCCTGAAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTCTGCACACAAGCTTCTGCTTCCCTTAGACCATCAATGTCTCAAGTTGCTTGCATGTTAAGCAATTCAAATTTGGATGTGCCTATACCAAAACAGCCTCCATTTTTGAACTCTAGATTGCTCAGTCAAACAGCTCCTTTAGGTTTTAGCATAGATAACTCCTCATCAAACACATTTCAAAAGATTGGTGTGTCTTATAGCCCCTCTCAGTCCTCTAGTTCATATAGCTTAATTAGATCATCCAAAACTGAAGAAACAATTTTGGAAGCTTGA	2001	0.4208	MPFKCHSNQCKIAAFDVVILAVATLLCFSHSAVSDPRISEVGLYCGTHRASPSGNYVPVFTKEMERLQELVSKSNWGIHSEELSSTSRIYGLAQCFQDLSKVDCLQCFAASRTKLPRCVPSVSGHIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTTQYGGVAGEAERLVFGKSVGKVVENVVRVAVNEGRGFAVGESEGVYALAQCWKTVGEKGCGDCLKKAGNEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEHGEGDDSSRKRTIITAVSVLAAVVVVLSLLVSYVAFTKKRKKNDFIEIPSYLKNSSLNYKYETLEKATDYFSTSRKIGQGGAGSVFKGTLPNGKDVAVKRLIFNNRQWVDDFFNEVNLISGMNHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFIFEKDKTRILKWKQRFEIIVGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLHPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLETASGRKNNVFREDSGSLLQTIWKLYQSNRLAEAVDPCLGDEFPEREASRVFQIGLLCTQASASLRPSMSQVACMLSNSNLDVPIPKQPPFLNSRLLSQTAPLGFSIDNSSSNTFQKIGVSYSPSQSSSSYSLIRSSKTEETILEA	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g01136	666	FunFam	Cysteine-rich receptor-like protein kinase 2	294	403	-	-
	Vimu8g01136	666	ProSiteProfiles	Gnk2-homologous domain profile.	38	140	IPR002902	-
	Vimu8g01136	666	FunFam	Cysteine-rich receptor-like protein kinase 2	38	140	-	-
	Vimu8g01136	666	Gene3D	Transferase(Phosphotransferase) domain 1	404	603	-	-
	Vimu8g01136	666	FunFam	Cysteine-rich receptor-like protein kinase 3	153	251	-	-
	Vimu8g01136	666	ProSiteProfiles	Gnk2-homologous domain profile.	149	251	IPR002902	-
	Vimu8g01136	666	SMART	serkin_6	328	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g01136	666	FunFam	Cysteine-rich receptor-like protein kinase 2	404	604	-	-
	Vimu8g01136	666	Pfam	Protein tyrosine and serine/threonine kinase	330	594	IPR001245	GO:0004672\|GO:0006468
	Vimu8g01136	666	SUPERFAMILY	Protein kinase-like (PK-like)	314	616	IPR011009	-
	Vimu8g01136	666	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	621	-	-
	Vimu8g01136	666	CDD	STKc_IRAK	334	596	-	-
	Vimu8g01136	666	Gene3D	Phosphorylase Kinase; domain 1	289	403	-	-
	Vimu8g01136	666	ProSiteProfiles	Protein kinase domain profile.	328	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g01136	666	Gene3D	-	164	251	IPR038408	-
	Vimu8g01136	666	Gene3D	-	40	140	IPR038408	-
	Vimu8g01136	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Vimu8g01136	666	Pfam	Salt stress response/antifungal	169	248	IPR002902	-
	Vimu8g01136	666	Pfam	Salt stress response/antifungal	58	138	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01136	Vimu-Chr8	18344150	18348871	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01136	17	617	Receptor kinase-like Gene Family	AT1G70520	45.367	3.30e-175	512

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vimu8g01136		PK_Tyr_Ser-Thr	8.4e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01136	-		-	gmx:100819689	1071.23