Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01129 ATGAACATGAACATGAACATGTCTGCTTGCAACCCTACCTCTATCATGGAGGCTCATTCCAACCCTGTTACCCCTTTCTATGGAGGCTTTGCTAATGATCACTCTCACCATTCTGTGACGTTGGAGCCAAACAAAAACAAAGTCATATGTAAATTTTCACAGAAAACCATGTCGGTTCATCCATCTCAAACTTCATGTTCCAAATCATCACCATTACCTTTTTCTCTCTTTAATAACTGTGGATTAGAGATGATGAGTGATTTTCTCTGGGACACTGATCAAAATGCAAAGGTCAAAAATGATACCAACATTGCTAATCATCACATAATCAAAGGGCAATGGACTCCTGAAGAAGATAGAGCTCTTGTGGAATTGAAGGGATCATGGAGCTTGGAGGAAGACATGATTTTGATCAAAGGGCATCAAGAATTTGGAAGAAAATGGTCAAAGATTGCAAAGAGATTGAGTGGTAGGACTGAGAATGATATCAAGAACCGATGGAATGCAACCATCCGACGCCAAAACTGCAACAAGAACAGCCAAACTCACTACAAAGGCTCACTGCTCCATGCCTATGTTAAATGGGTCACTGCAACTGAAGATAAACTTCTCAGAAAACCCTCACACAAGAAGAATAAAAATGTATTAGGATGCACTTGTGATGAGCTAGCTCTTTTGTTGAGCTAG 687 0.4017 MNMNMNMSACNPTSIMEAHSNPVTPFYGGFANDHSHHSVTLEPNKNKVICKFSQKTMSVHPSQTSCSKSSPLPFSLFNNCGLEMMSDFLWDTDQNAKVKNDTNIANHHIIKGQWTPEEDRALVELKGSWSLEEDMILIKGHQEFGRKWSKIAKRLSGRTENDIKNRWNATIRRQNCNKNSQTHYKGSLLHAYVKWVTATEDKLLRKPSHKKNKNVLGCTCDELALLLS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01129 228 Pfam Myb-like DNA-binding domain 126 168 IPR001005 -
Vimu8g01129 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 175 IPR017930 -
Vimu8g01129 228 PANTHER MYB PROTEIN-RELATED 126 182 - -
Vimu8g01129 228 SUPERFAMILY Homeodomain-like 126 177 IPR009057 -
Vimu8g01129 228 SMART sant 125 173 IPR001005 -
Vimu8g01129 228 Gene3D - 128 190 - -
Vimu8g01129 228 CDD SANT 128 168 IPR001005 -
Vimu8g01129 228 ProSiteProfiles Myb-like domain profile. 126 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01129 Vimu-Chr8 18283752 18285269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01129 109 194 MYB Transcription Factor Family AT4G18770 40.323 3.67e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g01129 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01129 - K09422 vra:111242362 336.265